Evidence map›Paper›PMID 23918385›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Conditionals by inversion provide a universal method for the generation of conditional alleles.

Aris N Economides, David Frendewey, Peter Yang, Melissa G Dominguez, Anthony T Dore, Ivan B Lobov, Trikaldarshi Persaud, Jose Rojas, Joyce McClain, Peter Lengyel and 24 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed.

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  7. Misrepresentation of mouse genotypes: A call for precision.Toxicology and applied pharmacology · 2025
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  14. Sostdc1 Suppression in the Absence of Sclerostin Potentiates Anabolic Action of Cortical Bone in Mice.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors.

Aris N EconomidesRegeneron Pharmaceuticals, Inc, Tarrytown, NY 10591, USA. aris@regeneron.com
David Frendewey
Peter Yang
Melissa G Dominguez
Anthony T Dore
Ivan B Lobov
Trikaldarshi Persaud
Jose Rojas
Joyce McClain
Peter Lengyel
Gustavo Droguett
Rostislav Chernomorsky
Sean Stevens
Wojtek Auerbach
Thomas M Dechiara
William Pouyemirou
Joseph M Cruz
Kieran Feeley
Ian A Mellis
Jason Yasenchack
Sarah J Hatsell
Liqin Xie
Esther Latres
Lily Huang
Yuhong Zhang
Evangelos Pefanis
Dimitris Skokos
Ron A Deckelbaum
Susan D Croll
Samuel Davis
David M Valenzuela
Nicholas W Gale
Andrew J Murphy
George D Yancopoulos

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Conditional mutagenesis is becoming a method of choice for studying gene function, but constructing conditional alleles is often laborious, limited by target gene structure, and at times, prone to incomplete conditional ablation. To address these issues, we developed a technology termed conditionals by inversion (COIN). Before activation, COINs contain an inverted module (COIN module) that lies inertly within the antisense strand of a resident gene. When inverted into the sense strand by a site-specific recombinase, the COIN module causes termination of the target gene's transcription and simultaneously provides a reporter for tracking this event. COIN modules can be inserted into natural introns (intronic COINs) or directly into coding exons as part of an artificial intron (exonic COINs), greatly simplifying allele design and increasing flexibility over previous conditional KO approaches. Detailed analysis of over 20 COIN alleles establishes the reliability of the method and its broad applicability to any gene, regardless of exon-intron structure. Our extensive testing provides rules that help ensure success of this approach and also explains why other currently available conditional approaches often fail to function optimally. Finally, the ability to split exons using the COIN's artificial intron opens up engineering modalities for the generation of multifunctional alleles.

Indexed as

AllelesGene SilencingDNA NucleotidyltransferasesGenetic EngineeringMutagenesis, InsertionalSequence InversionDNA NucleotidyltransferasesSite-specific recombinaseconditional-nullgenome engineering

Identifiers

PMID23918385
PMCPMC3752204

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.