Evidence map›Paper›PMID 23918356›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Target specificity among canonical nuclear poly(A) polymerases in plants modulates organ growth and pathogen response.

Son Lang Vi, Gerda Trost, Peggy Lange, Hjördis Czesnick, Nishta Rao, Diana Lieber, Thomas Laux, William M Gray, James L Manley, Detlef Groth and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. OverexpressingMarine drugs · 2022
    Article
  10. Article
  11. Article
  12. Rapid Auxin-Mediated Cell Expansion.Annual review of plant biology · 2020
    Review
  13. Review
  14. Review
  15. Article
  16. Development and Validation of Markers for the Fertility Restorer GeneInternational journal of molecular sciences · 2019
    Article
  17. RNA uridylation and decay in plants.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Son Lang ViInstitut für Biochemie und Biologie, Universität Potsdam, 14476 Potsdam, Germany.
Gerda Trost
Peggy Lange
Hjördis Czesnick
Nishta Rao
Diana Lieber
Thomas Laux
William M Gray
James L Manley
Detlef Groth
Christian Kappel
Michael Lenhard
University of Potsdam · DEColumbia University · USUniversity of Freiburg · DEJohn Innes Centre · GBUniversity of Minnesota · US

Funding

MRNA SYTHESIS IN ANIMAL CELLS--3END FORMATIONR01GM028983 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI MANLEY, JAMES L. · 1985 to 2014
$6.4M
Molecular mechanisms of auxin response in ArabidopsisR01GM067203 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI GRAY, WILLIAM M · 2003 to 2020
$3.5M
NIGMS NIH HHS GM067203NIGMS NIH HHS GM28983NIGMS NIH HHS R01 GM028983NIGMS NIH HHS R01 GM067203
6 · The paper itself

Abstract

Polyadenylation of pre-mRNAs is critical for efficient nuclear export, stability, and translation of the mature mRNAs, and thus for gene expression. The bulk of pre-mRNAs are processed by canonical nuclear poly(A) polymerase (PAPS). Both vertebrate and higher-plant genomes encode more than one isoform of this enzyme, and these are coexpressed in different tissues. However, in neither case is it known whether the isoforms fulfill different functions or polyadenylate distinct subsets of pre-mRNAs. Here we show that the three canonical nuclear PAPS isoforms in Arabidopsis are functionally specialized owing to their evolutionarily divergent C-terminal domains. A strong loss-of-function mutation in PAPS1 causes a male gametophytic defect, whereas a weak allele leads to reduced leaf growth that results in part from a constitutive pathogen response. By contrast, plants lacking both PAPS2 and PAPS4 function are viable with wild-type leaf growth. Polyadenylation of SMALL AUXIN UP RNA (SAUR) mRNAs depends specifically on PAPS1 function. The resulting reduction in SAUR activity in paps1 mutants contributes to their reduced leaf growth, providing a causal link between polyadenylation of specific pre-mRNAs by a particular PAPS isoform and plant growth. This suggests the existence of an additional layer of regulation in plant and possibly vertebrate gene expression, whereby the relative activities of canonical nuclear PAPS isoforms control de novo synthesized poly(A) tail length and hence expression of specific subsets of mRNAs.

Indexed as

Active Transport, Cell NucleusArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantGenotypeMicroarray AnalysisMutationPlant LeavesPolynucleotide AdenylyltransferaseReal-Time Polymerase Chain ReactionRNA, MessengerRNA PrecursorsSubstrate SpecificityArabidopsis ProteinsPolynucleotide AdenylyltransferaseRNA, MessengerRNA PrecursorsSAUR-AC1 protein, Arabidopsis

Identifiers

PMID23918356
PMCPMC3752211
OpenAlexW2063844847

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.