Evidence map›Paper›PMID 23917791›Full record

ArticleEpigenetics2013

Quantitative DNA methylation analysis improves epigenotype-phenotype correlations in Beckwith-Wiedemann syndrome.

Mariarosaria Calvello, Silvia Tabano, Patrizia Colapietro, Silvia Maitz, Alessandra Pansa, Claudia Augello, Faustina Lalatta, Barbara Gentilin, Filippo Spreafico, Luciano Calzari and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Epigenetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 38 citations in OpenAlex.

  1. Trial
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  8. Review
  9. Article
  10. Extensive Placental Methylation Profiling in Normal Pregnancies.International journal of molecular sciences · 2021
    Article
  11. Review
  12. Article
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  15. Article
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  18. Role of DNA methylation in imprinting disorders: an updated review.Journal of assisted reproduction and genetics · 2017
    Review
  19. Article
  20. (Epi)genotype-phenotype correlations in Beckwith-Wiedemann syndrome.European journal of human genetics : EJHG · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 11 institutions in 6 countries.

Mariarosaria CalvelloDivision of Pathology; Fondazione IRCCS Cà Granda Ospedale Maggiore Policlinico; Milano, Italy.
Silvia TabanoDivision of Pathology; Fondazione IRCCS Cà Granda Ospedale Maggiore Policlinico; Milano, Italy; Department of Pathophysiology and Transplantation; Università degli Studi di Milano; Milano, Italy.
Patrizia ColapietroDepartment of Health Sciences; Università degli Studi di Milano; Milano, Italy.
Silvia MaitzClinical Genetics; Pediatric Department; S. Gerardo Hospital; Fondazione MBBM; Università di Milano-Bicocca; Monza, Italy.
Alessandra PansaDepartment of Pathophysiology and Transplantation; Università degli Studi di Milano; Milano, Italy.
Claudia AugelloDepartment of Pathophysiology and Transplantation; Università degli Studi di Milano; Milano, Italy.
Faustina LalattaClinical Genetics Unit; Fondazione IRCCS Cà Granda Ospedale Maggiore Policlinico; Milano, Italy.
Barbara GentilinClinical Genetics Unit; Fondazione IRCCS Cà Granda Ospedale Maggiore Policlinico; Milano, Italy.
Filippo SpreaficoPediatric Oncology Unit; Fondazione IRCCS Istituto Nazionale dei Tumori; Milano, Italy.
Luciano CalzariMolecular Biology Laboratory; Istituto Auxologico Italiano; Milano, Italy.
Daniela PerottiMolecular Bases of Genetic Risk and Genetic Testing Unit; Department of Preventive and Predictive Medicine; Fondazione IRCCS Istituto Nazionale dei Tumori; Milano, Italy.
Lidia LarizzaDepartment of Health Sciences; Università degli Studi di Milano; Milano, Italy; Molecular Biology Laboratory; Istituto Auxologico Italiano; Milano, Italy.
Silvia RussoMolecular Biology Laboratory; Istituto Auxologico Italiano; Milano, Italy.
Angelo SelicorniClinical Genetics; Pediatric Department; S. Gerardo Hospital; Fondazione MBBM; Università di Milano-Bicocca; Monza, Italy.
Silvia M SirchiaDivision of Pathology; Fondazione IRCCS Cà Granda Ospedale Maggiore Policlinico; Milano, Italy; Department of Health Sciences; Università degli Studi di Milano; Milano, Italy.
Monica MiozzoDivision of Pathology; Fondazione IRCCS Cà Granda Ospedale Maggiore Policlinico; Milano, Italy; Department of Pathophysiology and Transplantation; Università degli Studi di Milano; Milano, Italy.
Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico · ITIstituto Nazionale di Fisica Nucleare, Sezione di Milano · ITDepartment of Medical Sciences · BYFondazione IRCCS Istituto Nazionale dei Tumori · ITIRCCS Istituto Auxologico Italiano · ITMRC Laboratory of Molecular Biology · GBPediatric Oncology Group · CAPediatrics and Genetics · USUniversidad Gerardo Barrios · SVUniversity of Milan · ITUniversity of Milano-Bicocca · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Beckwith-Wiedemann syndrome (BWS) is a rare disorder characterized by overgrowth and predisposition to embryonal tumors. BWS is caused by various epigenetic and/or genetic alterations that dysregulate the imprinted genes on chromosome region 11p15.5. Molecular analysis is required to reinforce the clinical diagnosis of BWS and to identify BWS patients with cancer susceptibility. This is particularly crucial prenatally because most signs of BWS cannot be recognized in utero. We established a reliable molecular assay by pyrosequencing to quantitatively evaluate the methylation profiles of ICR1 and ICR2. We explored epigenotype-phenotype correlations in 19 patients that fulfilled the clinical diagnostic criteria for BWS, 22 patients with suspected BWS, and three fetuses with omphalocele. Abnormal methylation was observed in one prenatal case and 19 postnatal cases, including seven suspected BWS. Seven cases showed ICR1 hypermethylation, five cases showed ICR2 hypomethylation, and eight cases showed abnormal methylation of ICR1 and ICR2 indicating paternal uniparental disomy (UPD). More cases of ICR1 alterations and UPD were found than expected. This is likely due to the sensitivity of this approach, which can detect slight deviations in methylation from normal levels. There was a significant correlation (p<0.001) between the percentage of ICR1 methylation and BWS features: severe hypermethylation (range: 75-86%) was associated with macroglossia, macrosomia, and visceromegaly, whereas mild hypermethylation (range: 55-59%) was associated with umbilical hernia and diastasis recti. Evaluation of ICR1 and ICR2 methylation by pyrosequencing in BWS can improve epigenotype-phenotype correlations, detection of methylation alterations in suspected cases, and identification of UPD.

Indexed as

DNA MethylationEpigenesis, GeneticBeckwith-Wiedemann SyndromeChildChild, PreschoolFemaleFetal DiseasesGenomic ImprintingHernia, UmbilicalHumansInfantMalePhenotypeBWSDNA methylationgenomic imprintingpyrosequencingUPD

Identifiers

PMID23917791
PMCPMC3891686
OpenAlexW2052515804

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.