Evidence map›Paper›PMID 23913686›Full record

ArticleThe Journal of biological chemistry2013

Functional modeling identifies paralogous solanesyl-diphosphate synthases that assemble the side chain of plastoquinone-9 in plastids.

Anna Block, Rikard Fristedt, Sara Rogers, Jyothi Kumar, Brian Barnes, Joshua Barnes, Christian G Elowsky, Yashitola Wamboldt, Sally A Mackenzie, Kevin Redding and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 59 citations in OpenAlex.

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  13. Effects ofPlants (Basel, Switzerland) · 2020
    Article
  14. Article
  15. Functional Gene Network of Prenyltransferases inMolecules (Basel, Switzerland) · 2019
    Review
  16. Article
  17. Multiomics resolution of molecular events during a day in the life of Chlamydomonas.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  18. Article
  19. Plastoquinone homoeostasis byCommunications biology · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Anna BlockCenter for Plant Science Innovation, University of Nebraska, Lincoln, Nebraska 68588.
Rikard FristedtDepartment of Chemistry and Biochemistry, University of California, Los Angeles, California 90095.
Sara RogersCenter for Plant Science Innovation, University of Nebraska, Lincoln, Nebraska 68588.
Jyothi KumarCenter for Plant Science Innovation, University of Nebraska, Lincoln, Nebraska 68588.
Brian BarnesCenter for Plant Science Innovation, University of Nebraska, Lincoln, Nebraska 68588.
Joshua BarnesCenter for Plant Science Innovation, University of Nebraska, Lincoln, Nebraska 68588.
Christian G ElowskyCenter for Plant Science Innovation, University of Nebraska, Lincoln, Nebraska 68588.
Yashitola WamboldtCenter for Plant Science Innovation, University of Nebraska, Lincoln, Nebraska 68588.
Sally A MackenzieCenter for Plant Science Innovation, University of Nebraska, Lincoln, Nebraska 68588.
Kevin ReddingDepartment of Chemistry and Biochemistry, Arizona State University, Tempe, Arizona 85287.
Sabeeha S MerchantDepartment of Chemistry and Biochemistry, University of California, Los Angeles, California 90095.
Gilles J BassetCenter for Plant Science Innovation, University of Nebraska, Lincoln, Nebraska 68588. Electronic address: gbasset2@unl.edu.
University of Nebraska–Lincoln · USUniversity of California, Los Angeles · USArizona State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

It is a little known fact that plastoquinone-9, a vital redox cofactor of photosynthesis, doubles as a precursor for the biosynthesis of a vitamin E analog called plastochromanol-8, the physiological significance of which has remained elusive. Gene network reconstruction, GFP fusion experiments, and targeted metabolite profiling of insertion mutants indicated that Arabidopsis possesses two paralogous solanesyl-diphosphate synthases, AtSPS1 (At1g78510) and AtSPS2 (At1g17050), that assemble the side chain of plastoquinone-9 in plastids. Similar paralogous pairs were detected throughout terrestrial plant lineages but were not distinguished in the literature and genomic databases from mitochondrial homologs involved in the biosynthesis of ubiquinone. The leaves of the atsps2 knock-out were devoid of plastochromanol-8 and displayed severe losses of both non-photoactive and photoactive plastoquinone-9, resulting in near complete photoinhibition at high light intensity. Such a photoinhibition was paralleled by significant damage to photosystem II but not to photosystem I. In contrast, in the atsps1 knock-out, a small loss of plastoquinone-9, restricted to the non-photoactive pool, was sufficient to eliminate half of the plastochromanol-8 content of the leaves. Taken together, these results demonstrate that plastochromanol-8 originates from a subfraction of the non-photoactive pool of plastoquinone-9. In contrast to other plastochromanol-8 biosynthetic mutants, neither the single atsps knock-outs nor the atsps1 atsps2 double knock-out displayed any defects in tocopherols accumulation or germination.

Indexed as

Models, BiologicalAlkyl and Aryl TransferasesArabidopsisArabidopsis ProteinsChloroplast ProteinsChromansGene Knockdown TechniquesGerminationPhotosystem II Protein ComplexPhotosystem I Protein ComplexPlastidsPlastoquinoneTocopherolsVitamin EAlkyl and Aryl TransferasesArabidopsis ProteinsChloroplast ProteinsChromansPhotosystem II Protein ComplexPhotosystem I Protein Complexplastochromanol 8PlastoquinoneSPS1 protein, ArabidopsisSPS2 protein, ArabidopsisTocopherolsVitamin EArabidopsisPhotosystem IIQuinonesTerpenoidsVitamin E

Identifiers

PMID23913686
PMCPMC3779756
OpenAlexW2039694742

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.