Evidence map›Paper›PMID 23912945›Full record

ArticleNature neuroscience2013

Top3β is an RNA topoisomerase that works with fragile X syndrome protein to promote synapse formation.

Dongyi Xu, Weiping Shen, Rong Guo, Yutong Xue, Wei Peng, Jian Sima, Jay Yang, Alexei Sharov, Subramanya Srikantan, Jiandong Yang and 14 more

Open access · greenAbstract read
In one paragraph

Article in Nature neuroscience, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 110 papers.

0numbers the graph read from it
0cells of the map it votes in
110citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

110 citing papers in PubMed, 149 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. The Roles of Topoisomerases in Transcriptional Regulation.International journal of molecular sciences · 2026
    Review
  6. Current aging science · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Furanoheliangolides fromJournal of natural products · 2025
    Article
  13. Article
  14. Topoisomerase IIIβ protects from tumorigenesis and immune dysregulation.bioRxiv : the preprint server for biology · 2025
    Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article

50 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors at 9 institutions in 3 countries.

Dongyi XuGenome Instability and Chromatin-Remodeling Section, National Institute on Aging, National Institutes of Health, Baltimore, Maryland, USA.
Weiping Shen
Rong Guo
Yutong Xue
Wei Peng
Jian Sima
Jay Yang
Alexei Sharov
Subramanya Srikantan
Jiandong Yang
David Fox
Yong Qian
Jennifer L Martindale
Yulan Piao
James Machamer
Samit R Joshi
Subhasis Mohanty
Albert C Shaw
Thomas E Lloyd
Grant W Brown
Minoru S H Ko
Myriam Gorospe
Sige Zou
Weidong Wang
National Institute on Aging · USNational Institutes of Health · USYale University · USInstitute on Aging · USUniversity of Toronto · CAJohns Hopkins Medicine · USJohns Hopkins University · USNational Institute on Drug Abuse · USPeking University · CN

Funding

RNA-binding Factors Implicated in Neurogenesis, Alzheimer's Disease, and other Neurodegenerative PathologiesZIAAG000518 · NIA · NATIONAL INSTITUTE ON AGING · PI GOROSPE, MYRIAM · 2009 to 2025
$11.6M
Murine Mutagenesis CoreP30NS050274 · NINDS · JOHNS HOPKINS UNIVERSITY · PI KOLODKIN, ALEX L · 2005 to 2020
$10.9M
Investigation of an RNA topoisomerase complex involved in Fragile X syndromeZIAAG000689 · NIA · NATIONAL INSTITUTE ON AGING · PI WANG, WEIDONG · 2011 to 2025
$6.9M
Identification and characterization Of A Complex Involved In Bloom SyndromeZIAAG000657 · NIA · NATIONAL INSTITUTE ON AGING · PI WANG, WEIDONG · 2009 to 2021
$6.2M
Development and maintenance of bioinformatics tools for mouse biologyZIAAG000702 · NIA · NATIONAL INSTITUTE ON AGING · PI SCHLESSINGER, DAVID · 2009 to 2016
$4.1M
Functional Genomic Study of Aging and Aging InterventionsZIAAG000365 · NIA · NATIONAL INSTITUTE ON AGING · PI ZOU, SIGE · 2009 to 2015
$3.7M
Midcareer Award in Translational Immunology of AgingK24AG042489 · NIA · YALE UNIVERSITY · PI SHAW, ALBERT C · 2012 to 2022
$1.8M
Dynactin function in axons, synapses, and neurodegenerative diseaseR01NS082563 · NINDS · JOHNS HOPKINS UNIVERSITY · PI LLOYD, THOMAS E. · 2013 to 2017
$1.8M
ISOLATION OF PROTEIN COMPLEX INVOLVED IN BLOOM SYNDROMEZ01AG000657 · NIA · NATIONAL INSTITUTE ON AGING · PI WANG, WEIDONG · 2000 to 2008
$636k
CIHR MOP-79368Intramural NIH HHS Z01 AG000657Intramural NIH HHS ZIA AG000365NIA NIH HHS K24 AG042489NIA NIH HHS Z01 AG000657-08NINDS NIH HHS NS050274NINDS NIH HHS P30 NS050274NINDS NIH HHS R01 NS082563
6 · The paper itself

Abstract

Topoisomerases are crucial for solving DNA topological problems, but they have not been linked to RNA metabolism. Here we show that human topoisomerase 3β (Top3β) is an RNA topoisomerase that biochemically and genetically interacts with FMRP, a protein that is deficient in fragile X syndrome and is known to regulate the translation of mRNAs that are important for neuronal function, abnormalities of which are linked to autism. Notably, the FMRP-Top3β interaction is abolished by a disease-associated mutation of FMRP, suggesting that Top3β may contribute to the pathogenesis of mental disorders. Top3β binds multiple mRNAs encoded by genes with neuronal functions linked to schizophrenia and autism. Expression of one such gene, that encoding protein tyrosine kinase 2 (ptk2, also known as focal adhesion kinase or FAK), is reduced in the neuromuscular junctions of Top3β mutant flies. Synapse formation is defective in Top3β mutant flies and mice, as well as in FMRP mutant flies and mice. Our findings suggest that Top3β acts as an RNA topoisomerase and works with FMRP to promote the expression of mRNAs that are crucial for neurodevelopment and mental health.

Indexed as

AnimalsAnimals, Genetically ModifiedCells, CulturedChickensDNA Topoisomerases, Type IDrosophilaDrosophila ProteinsEmbryo, MammalianEyeFragile X Messenger Ribonucleoprotein 1Gene Expression RegulationHumansMiceMice, Inbred C57BLNerve Tissue ProteinsNeurogenesisDNA Topoisomerases, Type IDrosophila ProteinsFragile X Messenger Ribonucleoprotein 1Nerve Tissue ProteinsRNA-Binding Proteins

Identifiers

PMID23912945
PMCPMC3853347
OpenAlexW2004575367

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.