ReviewMetallomics : integrated biometal science2013
Methodological approaches for using synchrotron X-ray fluorescence (SXRF) imaging as a tool in ionomics: examples from Arabidopsis thaliana.
Review in Metallomics : integrated biometal science, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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15 citing papers in PubMed.
- Integrative Multi-Omics Approaches for Identifying and Characterizing Biological Elements in Crop Traits: Current Progress and Future Prospects.International journal of molecular sciences · 2025Review
- Visualizing Metal Distribution in Plants Using Synchrotron X-Ray Fluorescence Microscopy Techniques.Methods in molecular biology (Clifton, N.J.) · 2023Article
- Multimodal synchrotron X-ray fluorescence imaging reveals elemental distribution in seeds and seedlings of the Zn-Cd-Ni hyperaccumulator Noccaea caerulescens.Metallomics : integrated biometal science · 2022Article
- Advances in "Omics" Approaches for Improving Toxic Metals/Metalloids Tolerance in Plants.Frontiers in plant science · 2021Review
- Disease Ionomics: Understanding the Role of Ions in Complex Disease.International journal of molecular sciences · 2020Review
- Phylogenetic Diversity and Physiological Roles of Plant Monovalent Cation/HFrontiers in plant science · 2020Review
- M-BLANK: a program for the fitting of X-ray fluorescence spectra.Journal of synchrotron radiation · 2019Article
- A comparison of parametric and integrative approaches for X-ray fluorescence analysis applied to a Stroke model.Journal of synchrotron radiation · 2018Article
- Elemental Profiling of Rice FOX Lines Leads to Characterization of a New Zn Plasma Membrane Transporter, OsZIP7.Frontiers in plant science · 2018Article
- Metal Tolerance Protein 8 Mediates Manganese Homeostasis and Iron Reallocation during Seed Development and Germination.Plant physiology · 2017Article
- Common Bean Fe Biofortification Using Model Species' Lessons.Frontiers in plant science · 2017Article
- High-resolution elemental mapping of human placental chorionic villi using synchrotron X-ray fluorescence spectroscopy.Analytical and bioanalytical chemistry · 2015Article
- Recent Advances in the Measurement of Arsenic, Cadmium, and Mercury in Rice and Other Foods.Current environmental health reports · 2015Review
- Mn-euvering manganese: the role of transporter gene family members in manganese uptake and mobilization in plants.Frontiers in plant science · 2014Review
- Contrasting calcium localization and speciation in leaves of the Medicago truncatula mutant cod5 analyzed via synchrotron X-ray techniques.The Plant journal : for cell and molecular biology · 2013Article
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Abstract
Here we present approaches for using multi-elemental imaging (specifically synchrotron X-ray fluorescence microscopy, SXRF) in ionomics, with examples using the model plant Arabidopsis thaliana. The complexity of each approach depends on the amount of a priori information available for the gene and/or phenotype being studied. Three approaches are outlined, which apply to experimental situations where a gene of interest has been identified but has an unknown phenotype (phenotyping), an unidentified gene is associated with a known phenotype (gene cloning) and finally, a screening approach, where both gene and phenotype are unknown. These approaches make use of open-access, online databases with which plant molecular genetics researchers working in the model plant Arabidopsis will be familiar, in particular the Ionomics Hub and online transcriptomic databases such as the Arabidopsis eFP browser. The approaches and examples we describe are based on the assumption that altering the expression of ion transporters can result in changes in elemental distribution. We provide methodological details on using elemental imaging to aid or accelerate gene functional characterization by narrowing down the search for candidate genes to the tissues in which elemental distributions are altered. We use synchrotron X-ray microprobes as a technique of choice, which can now be used to image all parts of an Arabidopsis plant in a hydrated state. We present elemental images of leaves, stem, root, siliques and germinating hypocotyls.
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