Evidence map›Paper›PMID 23912718›Full record

ArticleNature communications2013

Human endonuclease V is a ribonuclease specific for inosine-containing RNA.

Yoko Morita, Toshihiro Shibutani, Nozomi Nakanishi, Kazuko Nishikura, Shigenori Iwai, Isao Kuraoka

Open access · hybridAbstract read
In one paragraph

Article in Nature communications, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 111 citations in OpenAlex.

  1. Article
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  12. Regulation and functions of non-mNature reviews. Molecular cell biology · 2023
    Review
  13. Article
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  18. Targeting RNA editing of antizyme inhibitor 1: A potential oligonucleotide-based antisense therapy for cancer.Molecular therapy : the journal of the American Society of Gene Therapy · 2021
    Article
  19. Review
  20. Review

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Yoko MoritaGraduate School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan.
Toshihiro Shibutani
Nozomi Nakanishi
Kazuko Nishikura
Shigenori Iwai
Isao Kuraoka
Osaka University · JPThe Wistar Institute · US

Funding

STRUCTURE AND FUNCTION OF DSRNA ADENOSINE DEAMINASER01GM040536 · NIGMS · WISTAR INSTITUTE · PI NISHIKURA, KAZUKO · 1991 to 2021
$8.1M
Functions of ADARI RNA Editase in ErythropoiesisR01HL070045 · NHLBI · WISTAR INSTITUTE · PI NISHIKURA, KAZUKO · 2002 to 2005
$1.7M
Control of Cardiogenesis by microRNA EditingRC1HL099342 · NHLBI · WISTAR INSTITUTE · PI NISHIKURA, KAZUKO · 2009 to 2010
$990k
NHLBI NIH HHS HL070045NHLBI NIH HHS HL099342NHLBI NIH HHS R01 HL070045NHLBI NIH HHS RC1 HL099342NIGMS NIH HHS GM040536NIGMS NIH HHS R01 GM040536
6 · The paper itself

Abstract

Deamination of DNA bases can create missense mutations predisposing humans to cancer and also interfere with other basic molecular genetic processes; this deamination generates deoxyinosine from deoxyadenosine. In Escherichia coli, the highly conserved endonuclease V is involved in alternative excision repair that removes deoxyinosine from DNA. However, its exact activities and roles in humans are unknown. Here we characterize the FLJ35220 protein, the human homologue of E. coli endonuclease V, hEndoV as a ribonuclease specific for inosine-containing RNA. hEndoV preferentially binds to RNA and efficiently hydrolyses the second phosphodiester bond located 3' to the inosine in unpaired inosine-containing ssRNA regions in dsRNA. It localizes to the cytoplasm in cells. The ribonuclease activity is promoted by Tudor staphylococcal nuclease and detected on inosine-containing dsRNA created by the action of adenosine deaminases acting on RNA. These results demonstrate that hEndoV controls the fate of inosine-containing RNA in humans.

Indexed as

Adenosine DeaminaseAmino Acid SequenceBase SequenceCytoplasmDeoxyribonuclease (Pyrimidine Dimer)DNADNA-Binding ProteinsEndonucleasesHEK293 CellsHumansInosineMolecular Sequence DataProtein TransportRecombinant ProteinsRibonucleasesRNA-Binding ProteinsADARB1 protein, humanAdenosine DeaminaseDeoxyribonuclease (Pyrimidine Dimer)DNADNA-Binding ProteinsEndonucleasesInosineRecombinant ProteinsRibonucleasesRNA-Binding ProteinsRNA, Double-StrandedTSN protein, human

Identifiers

PMID23912718
PMCPMC3741642
OpenAlexW1999361121

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.