ArticlePhotosynthesis research2013
A model of chlorophyll a fluorescence induction kinetics with explicit description of structural constraints of individual photosystem II units.
Article in Photosynthesis research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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12 citing papers in PubMed, 38 citations in OpenAlex.
- Mechanistic insights into photosynthetic linear electron transport flow: a mathematical modeling approach.Photosynthesis research · 2026Article
- Molecular, Brownian, kinetic and stochastic models of the processes in photosynthetic membrane of green plants and microalgae.Biophysical reviews · 2022Review
- Photosynthesis: basics, history and modelling.Annals of botany · 2020Review
- Modelling and simulation of chlorophyll fluorescence from PSII of a plant leaf as affected by both illumination light intensities and temperatures.IET systems biology · 2019Article
- Article
- Modelling and simulation of photosystem II chlorophyll fluorescence transition from dark-adapted state to light-adapted state.IET systems biology · 2018Article
- Modelling and simulation of chlorophyll fluorescence from photosystem II as affected by temperature.IET systems biology · 2018Article
- Simulation of chlorophyll fluorescence rise and decay kinetics, and PPhotosynthesis research · 2018Article
- In Silico Analysis of the Regulation of the Photosynthetic Electron Transport Chain in C3 Plants.Plant physiology · 2018Article
- Melatonin Improves the Photosynthetic Carbon Assimilation and Antioxidant Capacity in Wheat Exposed to Nano-ZnO Stress.Molecules (Basel, Switzerland) · 2017Article
- The plastoquinol-plastoquinone exchange mechanism in photosystem II: insight from molecular dynamics simulations.Photosynthesis research · 2017Article
- In silico optimization for production of biomass and biofuel feedstocks from microalgae.Journal of applied phycologyArticle
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Authors and funding
3 authors at 2 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Chlorophyll a fluorescence induction (FI) kinetics, in the microseconds to the second range, reflects the overall performance of the photosynthetic apparatus. In this paper, we have developed a novel FI model, using a rule-based kinetic Monte Carlo method, which incorporates not only structural and kinetic information on PSII, but also a simplified photosystem I. This model has allowed us to successfully simulate the FI under normal or different treatment conditions, i.e., with different levels of measuring light, under 3-(3',4'-dichlorophenyl)-1,1-dimethylurea treatment, under 2,5-dibromo-3-methyl-6-isopropyl-p-benzoquinone treatment, and under methyl viologen treatment. Further, using this model, we have systematically studied the mechanistic basis and factors influencing the FI kinetics. The results of our simulations suggest that (1) the J step is caused by the two-electron gate at the Q B site; (2) the I step is caused by the rate limitation of the plastoquinol re-oxidation in the plastoquinone pool. This new model provides a framework for exploring impacts of modifying not only kinetic but also structural parameters on the FI kinetics.
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