Evidence map›Paper›PMID 23912278›Full record

ArticleNature structural & molecular biology2013

Structure of EF-G-ribosome complex in a pretranslocation state.

Yun Chen, Shu Feng, Veerendra Kumar, Rya Ero, Yong-Gui Gao

Erratum issuedAbstract read
PubMed Publisher
In one paragraph

Article in Nature structural & molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 90 citations in OpenAlex.

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  9. Crystal Structure ofFrontiers in molecular biosciences · 2021
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  10. Review
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  12. Direct visualization of translational GTPase factor pool formed around the archaeal ribosomal P-stalk by high-speed AFM.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  13. Fusidic acid resistance through changes in the dynamics of the drug target.Proceedings of the National Academy of Sciences of the United States of America · 2020
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  17. Structural basis of elongation factor 2 switching.Current research in structural biology · 2020
    Article
  18. Article
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  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yun ChenSchool of Biological Sciences, Nanyang Technological University, Singapore.
Shu Feng
Veerendra Kumar
Rya Ero
Yong-Gui Gao
Nanyang Technological University · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In protein synthesis, elongation factor G (EF-G) facilitates movement of tRNA-mRNA by one codon, which is coupled to the ratchet-like rotation of the ribosome complex and is triggered by EF-G-mediated GTP hydrolysis. Here we report the structure of a pretranslocational ribosome bound to Thermus thermophilus EF-G trapped with a GTP analog. The positioning of the catalytic His87 into the active site coupled to hydrophobic-gate opening involves the 23S rRNA sarcin-ricin loop and domain III of EF-G and provides a structural basis for the GTPase activation of EF-G. Interactions of the hybrid peptidyl-site-exit-site tRNA with ribosomal elements, including the entire L1 stalk and proteins S13 and S19, shed light on how formation and stabilization of the hybrid tRNA is coupled to head swiveling and body rotation of the 30S as well as to closure of the L1 stalk.

Indexed as

Amino Acid SequenceBacterial ProteinsCatalytic DomainCrystallography, X-RayGuanosine TriphosphateModels, MolecularMolecular Sequence DataPeptide Elongation Factor GProtein ConformationProtein Interaction Domains and MotifsRibosomesRNA, BacterialRNA, MessengerRNA, TransferSequence Homology, Amino AcidThermus thermophilusBacterial ProteinsGuanosine TriphosphatePeptide Elongation Factor GRNA, BacterialRNA, MessengerRNA, Transfer

Identifiers

PMID23912278
OpenAlexW2088307810

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.