Evidence map›Paper›PMID 23911529›Full record

ArticleAnalytical biochemistry2013

Epigenetic analysis of laser capture microdissected fetal epithelia.

Ratnam S Seelan, Dennis R Warner, Partha M Mukhopadhyay, Sarah A Andres, Irina A Smolenkova, James L Wittliff, M Michele Pisano, Robert M Greene

Abstract read
In one paragraph

Article in Analytical biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ratnam S SeelanBirth Defects Center, Department of Molecular, Cellular, and Craniofacial Biology, University of Louisville, Louisville, KY 40202, USA.
Dennis R Warner
Partha M Mukhopadhyay
Sarah A Andres
Irina A Smolenkova
James L Wittliff
M Michele Pisano
Robert M Greene

Funding

U-SHAPED DEVELOPMENT IN INFANT COGNITION AND PERCEPTIONP20RR017702 · NCRR · UNIVERSITY OF LOUISVILLE · PI PISANO, M. MICHELE · 2002 to 2011
$15.0M
Molecular Determinants of Developmental DefectsP20GM103453 · NIGMS · UNIVERSITY OF LOUISVILLE · PI GREENE, ROBERT M · 2012 to 2012
$1.7M
Transcriptional Coactivators and Pregnancy OutcomesR01HD053509 · NICHD · UNIVERSITY OF LOUISVILLE · PI GREENE, ROBERT M · 2008 to 2012
$1.5M
NUTRITIONAL EPIGENETICS AND OROFACIAL DEVELOPMENTR01DE018215 · NIDCR · UNIVERSITY OF LOUISVILLE · PI GREENE, ROBERT M · 2008 to 2011
$1.3M
Integrated Analysis: Epigenetic Regulation of Gene Expression During Orofacial DeR03DE021460 · NIDCR · UNIVERSITY OF LOUISVILLE · PI BROCK, GUY, MUKHOPADHYAY, PARTHA · 2012 to 2013
$440k
NCRR NIH HHS P20 RR017702NICHD NIH HHS HD053509NICHD NIH HHS R01 HD053509NIDCR NIH HHS DE018215NIDCR NIH HHS DE021460NIDCR NIH HHS R01 DE018215NIDCR NIH HHS R03 DE021460NIGMS NIH HHS P20 GM103453
6 · The paper itself

Abstract

Laser capture microdissection (LCM) is a superior method for nondestructive collection of specific cell populations from tissue sections. Although DNA, RNA, and protein have been analyzed from LCM-procured samples, epigenetic analyses, particularly of fetal, highly hydrated tissue, have not been attempted. A standardized protocol with quality assurance measures was established to procure cells by LCM of the medial edge epithelia (MEE) of the fetal palatal processes for isolation of intact microRNA for expression analyses and genomic DNA (gDNA) for CpG methylation analyses. MicroRNA preparations, obtained using the RNAqueous Micro kit (Life Technologies), exhibited better yields and higher quality than those obtained using the Arcturus PicoPure RNA Isolation kit (Life Technologies). The approach was validated using real-time polymerase chain reaction (PCR) to determine expression of selected microRNAs (miR-99a and miR-200b) and pyrosequencing to determine CpG methylation status of selected genes (Aph1a and Dkk4) in the MEE. These studies describe an optimized approach for employing LCM of epithelial cells from fresh frozen fetal tissue that enables quantitative analyses of microRNA expression levels and CpG methylation.

Indexed as

Laser Capture MicrodissectionAnimalsCpG IslandsDNA MethylationEpigenesis, GeneticEpitheliumFetusMiceMicroRNAsMicroRNAsEpigeneticsEpitheliaLaser capture microdissectionMicroRNAPyrosequencing

Identifiers

PMID23911529
PMCPMC4356551

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.