Evidence map›Paper›PMID 23911137›Full record

ArticleAging cell2014

Targeted enrichment and high-resolution digital profiling of mitochondrial DNA deletions in human brain.

Sean D Taylor, Nolan G Ericson, Joshua N Burton, Tomas A Prolla, John R Silber, Jay Shendure, Jason H Bielas

Abstract read
In one paragraph

Article in Aging cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  7. Review
  8. Review
  9. Mitochondrial DNA Enrichment for Sensitive Next-Generation Sequencing.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  10. Small Vessel Disease: Ancient Description, Novel Biomarkers.International journal of molecular sciences · 2022
    Review
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  12. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Sean D TaylorTranslational Research Program, Public Health Sciences Division, Fred Hutchinson Cancer Research Center, 1100 Fairview Ave, Seattle, WA, 98109, USA.
Nolan G Ericson
Joshua N Burton
Tomas A Prolla
John R Silber
Jay Shendure
Jason H Bielas

Funding

Mechanisms of Environmental and Nuclear and Mitochondrial MutagenesisR01ES019319 · NIEHS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BIELAS, JASON H · 2010 to 2014
$2.5M
Dissecting the role of mitochondrial DNA mutations in cancerF32ES021703 · NIEHS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TAYLOR, SEAN DAVID · 2012 to 2013
$85k
NIEHS NIH HHS F32 ES021703NIEHS NIH HHS R01 ES019319
6 · The paper itself

Abstract

Due largely to the inability to accurately quantify and characterize de novo deletion events, the mechanisms underpinning the pathogenic expansion of mtDNA deletions in aging and neuromuscular disorders remain poorly understood. Here, we outline and validate a new tool termed 'Digital Deletion Detection' (3D) that allows for high-resolution analysis of rare deletions occurring at frequencies as low as 1 × 10(-8) . 3D is a three-step process that includes targeted enrichment for deletion-bearing molecules, single-molecule partitioning of genomes into thousands of droplets for direct quantification via droplet digital PCR, and breakpoint characterization using massively parallel sequencing. Using 3D, we interrogated over 8 billion mitochondrial genomes to analyze the age-related dynamics of mtDNA deletions in human brain tissue. We demonstrate that the total deletion load increases with age, while the total number and diversity of unique deletions remain constant. Our data provide support for the hypothesis that expansion of pre-existing mutations is the primary factor contributing to age-related accumulation of mtDNA deletions.

Indexed as

Sequence DeletionAdolescentAdultAgedAged, 80 and overAgingBrainDNA, MitochondrialDNA Mutational AnalysisGenetic HeterogeneityHumansMiddle AgedMitosisYoung AdultDNA, Mitochondrialaginggenome instabilitymitochondrial diseasemitochondrial DNAnext-generation sequencingrare deletion detection

Identifiers

PMID23911137
PMCPMC4068027

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.