Evidence map›Paper›PMID 23909704›Full record

ArticleJournal of the American Chemical Society2013

Nanomechanics of HaloTag tethers.

Ionel Popa, Ronen Berkovich, Jorge Alegre-Cebollada, Carmen L Badilla, Jaime Andrés Rivas-Pardo, Yukinori Taniguchi, Masaru Kawakami, Julio M Fernandez

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. The Bioimaging Story of AIEgens.Chemical & biomedical imaging · 2023
    Review
  7. Review
  8. Article
  9. One-step asparaginyl endopeptidase (RSC chemical biology · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ionel PopaDepartment of Biological Sciences, Columbia University, 1212 Amsterdam Avenue, New York, New York 10027, USA. ivp2105@columbia.edu
Ronen Berkovich
Jorge Alegre-Cebollada
Carmen L Badilla
Jaime Andrés Rivas-Pardo
Yukinori Taniguchi
Masaru Kawakami
Julio M Fernandez

Funding

Single Molecule Studies of Titin ElasticityR01HL061228 · NHLBI · MAYO CLINIC COLL OF MEDICINE, ROCHESTER · PI FERNANDEZ, JULIO M · 1999 to 2017
$7.4M
Nanomechanics of the extracellular matrixR01HL066030 · NHLBI · MAYO CLINIC COLL OF MEDICINE, ROCHESTER · PI FERNANDEZ, JULIO M · 2001 to 2013
$5.0M
NHLBI NIH HHS HL61228NHLBI NIH HHS HL66030NHLBI NIH HHS R01 HL061228NHLBI NIH HHS R01 HL066030NIAID NIH HHS 1K99AI06072
6 · The paper itself

Abstract

The active site of the Haloalkane Dehydrogenase (HaloTag) enzyme can be covalently attached to a chloroalkane ligand providing a mechanically strong tether, resistant to large pulling forces. Here we demonstrate the covalent tethering of protein L and I27 polyproteins between an atomic force microscopy (AFM) cantilever and a glass surface using HaloTag anchoring at one end and thiol chemistry at the other end. Covalent tethering is unambiguously confirmed by the observation of full length polyprotein unfolding, combined with high detachment forces that range up to ∼2000 pN. We use these covalently anchored polyproteins to study the remarkable mechanical properties of HaloTag proteins. We show that the force that triggers unfolding of the HaloTag protein exhibits a 4-fold increase, from 131 to 491 pN, when the direction of the applied force is changed from the C-terminus to the N-terminus. Force-clamp experiments reveal that unfolding of the HaloTag protein is twice as sensitive to pulling force compared to protein L and refolds at a slower rate. We show how these properties allow for the long-term observation of protein folding-unfolding cycles at high forces, without interference from the HaloTag tether.

Indexed as

NanotechnologyHydrolasesMechanical PhenomenaMicroscopy, Atomic ForceModels, MolecularProtein Foldinghaloalkane dehalogenaseHydrolases

Identifiers

PMID23909704
PMCPMC3874216

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.