Evidence map›Paper›PMID 23909651›Full record

ArticleThe journal of physical chemistry. B2013

Redox state dependence of axial ligand dynamics in Nitrosomonas europaea cytochrome c552.

Ravinder Kaur, Kara L Bren

Open access · greenAbstract read
In one paragraph

Article in The journal of physical chemistry. B, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 7 citations in OpenAlex.

  1. Contributions to cytochromeChemical science · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Ravinder KaurCenter for Infectious Disease and Immunology, Research Institute, Rochester General Hospital , Rochester, New York 14621, United States.
Kara L Bren
Rochester General Hospital · USUniversity of Rochester · US

Funding

Dynamics-stability relationship in cytochromes cR01GM063170 · NIGMS · UNIVERSITY OF ROCHESTER · PI BREN, KARA L. · 2002 to 2010
$2.0M
NIGMS NIH HHS R01 GM063170NIGMS NIH HHS R01-GM63170
6 · The paper itself

Abstract

Analysis of NMR spectra reveals that the heme axial Met ligand orientation and dynamics in Nitrosomonas europaea cytochrome c552 (Ne cyt c) are dependent on the heme redox state. In the oxidized state, the heme axial Met is fluxional, interconverting between two conformers related to each other by inversion through the Met δS atom. In the reduced state, there is no evidence of fluxionality, with the Met occupying one conformation similar to that seen in the homologous Pseudomonas aeruginosa cytochrome c551. Comparison of the observed and calculated pseudocontact shifts for oxidized Ne cyt c using the reduced protein structure as a reference structure reveals a redox-dependent change in the structure of the loop bearing the axial Met (loop 3). Analysis of nuclear Overhauser effects (NOEs) and existing structural data provides further support for the redox state dependence of the loop 3 structure. Implications for electron transfer function are discussed.

Indexed as

LigandsBacterial ProteinsCytochrome c GroupHemeNitrosomonas europaeaNuclear Magnetic Resonance, BiomolecularOxidation-ReductionPseudomonas aeruginosaRecombinant ProteinsBacterial Proteinscytochrome C(551)cytochrome C-552Cytochrome c GroupHemeLigandsRecombinant Proteins

Identifiers

PMID23909651
PMCPMC3865231
OpenAlexW2065598879

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.