Evidence map›Paper›PMID 23908356›Full record

ArticleThe Journal of biological chemistry2013

Identification of the major ubiquitin-binding domain of the Pseudomonas aeruginosa ExoU A2 phospholipase.

David M Anderson, Jimmy B Feix, Andrew L Monroe, Francis C Peterson, Brian F Volkman, Arthur L Haas, Dara W Frank

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Cells · 2023
    Review
  5. Article
  6. Article
  7. Perspectives on theToxins · 2021
    Review
  8. Article
  9. Article
  10. Article
  11. Interactions of the effector ExoU fromThe Journal of biological chemistry · 2019
    Article
  12. Article
  13. Identification of a ubiquitin-binding interface using Rosetta and DEER.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  14. Review
  15. Article
  16. Bacterial Sphingomyelinases and Phospholipases as Virulence Factors.Microbiology and molecular biology reviews : MMBR · 2016
    Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

David M AndersonFrom the Department of Microbiology and Molecular Genetics and the Center for Infectious Disease Research and.
Jimmy B Feix
Andrew L Monroe
Francis C Peterson
Brian F Volkman
Arthur L Haas
Dara W Frank
Medical College of Wisconsin · USLouisiana State University Health Sciences Center New Orleans · US

Funding

TR&D Project 3P41EB001980 · NIBIB · MEDICAL COLLEGE OF WISCONSIN · PI KLUG, CANDICE S · 2003 to 2017
$16.3M
Type III effector-cofactor dynamics within the cellular environmentR01AI104922 · NIAID · MEDICAL COLLEGE OF WISCONSIN · PI FEIX, JIMMY, FRANK, DARA W. · 2013 to 2021
$3.7M
Activity of Pseudomonas Type III ToxinsR01AI049577 · NIAID · MEDICAL COLLEGE OF WISCONSIN · PI FRANK, DARA W. · 2001 to 2011
$3.6M
NIAID NIH HHS 1R01 AI49577NIAID NIH HHS R01 AI049577NIAID NIH HHS R01 AI104922NIBIB NIH HHS P41 EB001980
6 · The paper itself

Abstract

Numerous Gram-negative bacterial pathogens use type III secretion systems to deliver effector molecules into the cytoplasm of a host cell. Many of these effectors have evolved to manipulate the host ubiquitin system to alter host cell physiology or the location, stability, or function of the effector itself. ExoU is a potent A2 phospholipase used by Pseudomonas aeruginosa to destroy membranes of infected cells. The enzyme is held in an inactive state inside of the bacterium due to the absence of a required eukaryotic activator, which was recently identified as ubiquitin. This study sought to identify the region of ExoU required to mediate this interaction and determine the properties of ubiquitin important for binding, ExoU activation, or both. Biochemical and biophysical approaches were used to map the ubiquitin-binding domain to a C-terminal four-helix bundle of ExoU. The hydrophobic patch of ubiquitin is required for full binding affinity and activation. Binding and activation were uncoupled by introducing an L8R substitution in ubiquitin. Purified L8R demonstrated a parental binding phenotype to ExoU but did not activate the phospholipase in vitro. Utilizing these new biochemical data and intermolecular distance measurements by double electron-electron resonance, we propose a model for an ExoU-monoubiquitin complex.

Indexed as

Bacterial ProteinsCircular DichroismCrystallography, X-RayElectronsGlutathione TransferaseMagnetic Resonance SpectroscopyPhospholipases A2Point MutationProtein BindingProtein Structure, TertiaryPseudomonas aeruginosaRecombinant ProteinsUbiquitinBacterial ProteinsGlutathione TransferasePhospholipases A2pseudomonas exoprotein A protein, Pseudomonas aeruginosaRecombinant ProteinsUbiquitinBacterial ToxinsPhospholipaseProtein-Protein InteractionsPseudomonas aeruginosaUbiquitin

Identifiers

PMID23908356
PMCPMC3772220
OpenAlexW2090403556

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.