Evidence map›Paper›PMID 23905516›Full record

ArticleBiochemistry2013

Investigations of heme ligation and ligand switching in cytochromes p450 and p420.

Yuhan Sun, Weiqiao Zeng, Abdelkrim Benabbas, Xin Ye, Ilia Denisov, Stephen G Sligar, Jing Du, John H Dawson, Paul M Champion

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Domain-Swap Dimerization ofMolecular pharmacology · 2020
    Article
  8. Article
  9. On the occurrence of cytochrome P450 in viruses.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  10. Article
  11. Spectroscopic evidence supporting neutral thiol ligation to ferrous heme iron.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2018
    Article
  12. Article
  13. Article
  14. Rapid kinetic methods to dissect steroidogenic cytochrome P450 reaction mechanisms.The Journal of steroid biochemistry and molecular biology · 2016
    Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Yuhan SunDepartment of Physics and Center for Interdisciplinary Research on Complex Systems, Northeastern University, Boston, Massachusetts 02115, United States.
Weiqiao Zeng
Abdelkrim Benabbas
Xin Ye
Ilia Denisov
Stephen G Sligar
Jing Du
John H Dawson
Paul M Champion
Northeastern University · USUniversity of Illinois Urbana-Champaign · USUniversity of South Carolina · US

Funding

NEAR-ULTRAVIOLET RAMAN STUDIES OF CYTOCHROME P450R01DK035090 · NIDDK · NORTHEASTERN UNIVERSITY · PI CHAMPION, PAUL M. · 1986 to 2012
$4.1M
HEME PROTEIN REDUCTASESR37GM031756 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI SLIGAR, STEPHEN G. · 1999 to 2008
$3.1M
SPECTROSCOPY AND MECHANISMS OF HEME-IRON OXYGENASESR01GM026730 · NIGMS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI DAWSON, JOHN H · 1985 to 2009
$2.1M
HEME PROTEIN REDUCTASESR01GM031756 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI SLIGAR, STEPHEN G. · 1985 to 2012
$1.5M
NIDDK NIH HHS DK35090NIDDK NIH HHS R01 DK035090NIGMS NIH HHS GM 26730NIGMS NIH HHS GM 31756NIGMS NIH HHS R01 GM026730NIGMS NIH HHS R01 GM031756NIGMS NIH HHS R37 GM031756
6 · The paper itself

Abstract

It is generally accepted that the inactive P420 form of cytochrome P450 (CYP) involves the protonation of the native cysteine thiolate to form a neutral thiol heme ligand. On the other hand, it has also been suggested that recruitment of a histidine to replace the native cysteine thiolate ligand might underlie the P450 → P420 transition. Here, we discuss resonance Raman investigations of the H93G myoglobin (Mb) mutant in the presence of tetrahydrothiophene (THT) or cyclopentathiol (CPSH), and on pressure-induced cytochrome P420cam (CYP101), that show a histidine becomes the heme ligand upon CO binding. The Raman mode near 220 cm⁻¹, normally associated with the Fe-histidine vibration in heme proteins, is not observed in either reduced P420cam or the reduced H93G Mb samples, indicating that histidine is not the ligand in the reduced state. The absence of a mode near 220 cm⁻¹ is also inconsistent with a generalization of the suggestion that the 221 cm⁻¹ Raman mode, observed in the P420-CO photoproduct of inducible nitric oxide synthase (iNOS), arises from a thiol-bound ferrous heme. This leads us to assign the 218 cm⁻¹ mode observed in the 10 ns P420cam-CO photoproduct Raman spectrum to a Fe-histidine vibration, in analogy to many other histidine-bound heme systems. Additionally, the inverse correlation plots of the νFe-His and νCO frequencies for the CO adducts of P420cam and the H93G analogs provide supporting evidence that histidine is the heme ligand in the P420-CO-bound state. We conclude that, when CO binds to the ferrous P420 state, a histidine ligand is recruited as the heme ligand. The common existence of an HXC-Fe motif in many CYP systems allows the C → H ligand switch to occur with only minor conformational changes. One suggested conformation of P420-CO involves the addition of another turn in the proximal L helix so that, when the protonated Cys ligand is dissociated from the heme, it can become part of the helix, and the heme is ligated by the His residue from the adjoining loop region. In other systems, such as iNOS and CYP3A4 (where the HXC-Fe motif is not found), a somewhat larger conformational change would be necessary to recuit a nearby histidine.

Indexed as

Camphor 5-MonooxygenaseCarbon MonoxideCytochrome P-450 Enzyme SystemHemeHistidineLigandsModels, MolecularMyoglobinProtein ConformationSpectrum Analysis, RamanCamphor 5-MonooxygenaseCarbon MonoxideCytochrome P-450 Enzyme SystemHemeHistidineLigandsMyoglobin

Identifiers

PMID23905516
PMCPMC3777526
OpenAlexW2038038833

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.