Evidence map›Paper›PMID 23903319›Full record

ArticleThe Plant cell2013

An Arabidopsis ATP-dependent, DEAD-box RNA helicase loses activity upon IsoAsp formation but is restored by PROTEIN ISOASPARTYL METHYLTRANSFERASE.

Nihar R Nayak, Andrea A Putnam, Balasubrahmanyam Addepalli, Jonathan D Lowenson, Tingsu Chen, Eckhard Jankowsky, Sharyn E Perry, Randy D Dinkins, Patrick A Limbach, Steven G Clarke and 1 more

Open access · greenAbstract read
In one paragraph

Article in The Plant cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
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  10. The Journal of biological chemistry · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Nihar R NayakDepartment of Horticulture, University of Kentucky, Lexington, KY 40546-0312, USA.
Andrea A Putnam
Balasubrahmanyam Addepalli
Jonathan D Lowenson
Tingsu Chen
Eckhard Jankowsky
Sharyn E Perry
Randy D Dinkins
Patrick A Limbach
Steven G Clarke
A Bruce Downie
University of Kentucky · USCase Western Reserve University · USUniversity of California, Los Angeles · USUniversity of Cincinnati · USAgricultural Research Service · US

Funding

UPLC for Enhanced Mass Spectrometry of Modified RNAsR01GM058843 · NIGMS · UNIVERSITY OF CINCINNATI · PI LIMBACH, PATRICK A · 1999 to 2025
$5.1M
CONTROL OF EUCARYOTIC FUNCTION BY METHYLATIONR37GM026020 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CLARKE, STEVEN G · 2000 to 2009
$5.0M
Center for Biomedical Research Excellence in the Molecular Basis of Human DiseaseP20GM103486 · NIGMS · UNIVERSITY OF KENTUCKY · PI LOUIS HERSH, LOUIS HERSH LOUIS HERSH · 2012 to 2013
$4.2M
Mechansim of DExH/D proteinsR01GM067700 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI JANKOWSKY, ECKHARD · 2003 to 2015
$4.2M
CONTROL OF EUKARYOTIC MEMBRANE FUNCTION BY METHYLATIONR01GM026020 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CLARKE, STEVEN G · 1985 to 2013
$2.1M
Mass Spectrometry of Ribosomal RNA:Protein InteractionsR56GM058843 · NIGMS · UNIVERSITY OF CINCINNATI · PI LIMBACH, PATRICK A · 2009 to 2009
$330k
NIGMS NIH HHS GM026020NIGMS NIH HHS GM58843NIGMS NIH HHS P20 GM103486NIGMS NIH HHS R01 GM026020NIGMS NIH HHS R01 GM058843NIGMS NIH HHS R01 GM067700NIGMS NIH HHS R37 GM026020NIGMS NIH HHS R56 GM058843
6 · The paper itself

Abstract

Orthodox seeds are capable of withstanding severe dehydration. However, in the dehydrated state, Asn and Asp residues in proteins can convert to succinimide residues that can further react to predominantly form isomerized isoAsp residues upon rehydration (imbibition). IsoAsp residues can impair protein function and can render seeds nonviable, but PROTEIN ISOASPARTYL METHYLTRANSFERASE (PIMT) can initiate isoAsp conversion to Asp residues. The proteins necessary for translation upon imbibition in orthodox seeds may be particularly important to maintain in an active state. One such protein is the large, multidomain protein, Arabidopsis thaliana PLANT RNA HELICASE75 (PRH75), a DEAD-box helicase known to be susceptible to isoAsp residue accumulation. However, the consequences of such isomerization on PRH75 catalysis and for the plant are unknown. Here, it is demonstrated that PRH75 is necessary for successful seed development. It acquires isoAsp rapidly during heat stress, which eliminates RNA unwinding (but not rewinding) competence. The repair by PIMT is able to restore PRH75's complex biochemical activity provided isoAsp formation has not led to subsequent, destabilizing conformational alterations. For PRH75, an important enzymatic activity associated with translation would be eliminated unless rapidly repaired by PIMT prior to additional, deleterious conformational changes that would compromise seed vitality and germination.

Indexed as

Adenosine TriphosphateAmino Acid SequenceArabidopsisArabidopsis ProteinsCircular DichroismDEAD-box RNA HelicasesEnzyme StabilityGenetic Complementation TestHot TemperatureHumansIsoaspartic AcidMass SpectrometryMolecular Sequence DataMutationNucleic Acid DenaturationPlants, Genetically ModifiedAdenosine TriphosphateArabidopsis ProteinsDEAD-box RNA HelicasesIsoaspartic AcidPRH75 protein, ArabidopsisProtein D-Aspartate-L-Isoaspartate MethyltransferaseRNA

Identifiers

PMID23903319
PMCPMC3753384
OpenAlexW2127747597

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.