Evidence map›Paper›PMID 23903194›Full record

ArticleDevelopment (Cambridge, England)2013

Phosphorylation of RNA polymerase II is independent of P-TEFb in the C. elegans germline.

Elizabeth Anne Bowman, Christopher Ray Bowman, Jeong H Ahn, William G Kelly

Abstract read
In one paragraph

Article in Development (Cambridge, England), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Dual Modes of Gene Regulation by CDK12.bioRxiv : the preprint server for biology · 2025
    Article
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  13. Development (Cambridge, England) · 2019
    Article
  14. Multiple roles of CTDK-I throughout the cell.Cellular and molecular life sciences : CMLS · 2019
    Review
  15. Review
  16. AMPK blocks starvation-inducible transgenerational defects inProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  17. The pol II CTD: new twists in the tail.Nature structural & molecular biology · 2016
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Elizabeth Anne BowmanDepartment of Biology, Emory University, Atlanta, GA 30322, USA.
Christopher Ray Bowman
Jeong H Ahn
William G Kelly

Funding

Unique Regulation of RNA Pol II During Primordial Germ Cell SpecificationR01GM101040 · NIGMS · EMORY UNIVERSITY · PI KELLY, WILLIAM G. · 2013 to 2016
$1.2M
Epigenetic Regulation of the Embryonic Germ LineR01GM077600 · NIGMS · EMORY UNIVERSITY · PI KELLY, WILLIAM G. · 2006 to 2009
$1.0M
NIGMS NIH HHS GM 077600NIGMS NIH HHS R01 GM077600NIGMS NIH HHS R01 GM101040
6 · The paper itself

Abstract

RNA polymerase II (Pol II) elongation in metazoans is thought to require phosphorylation of serine 2 (Ser2-P) of the Pol II C-terminal domain (CTD) by the P-TEFb complex, CDK-9/cyclin T. Another Ser2 kinase complex, CDK-12/cyclin K, which requires upstream CDK-9 activity has been identified in Drosophila and human cells. We show that regulation of Ser2-P in C. elegans soma is similar to other metazoan systems, but Ser2-P in the germline is independent of CDK-9, and largely requires only CDK-12. The observed differences are not due to differential tissue expression as both kinases and their cyclin partners are ubiquitously expressed. Surprisingly, loss of CDK-9 from germ cells has little effect on Ser2-P, yet CDK-9 is essential for germline development. By contrast, loss of CDK-12 and Ser2-P specifically from germ cells has little impact on germline development or function, although significant loss of co-transcriptional H3K36 trimethylation is observed. These results show a reduced requirement for Pol II Ser2-P in germline development and suggest that generating Ser2-P is not the essential role of CDK-9 in these cells. Transcriptional elongation in the C. elegans germline thus appears to be uniquely regulated, which may be a novel facet of germline identity.

Indexed as

AnimalsAnimals, Genetically ModifiedBlotting, WesternCaenorhabditis elegansClutch SizeCyclin-Dependent KinasesGerm CellsMicroscopy, FluorescencePhosphorylationPositive Transcriptional Elongation Factor BReal-Time Polymerase Chain ReactionRNA InterferenceRNA Polymerase IISerineCyclin-Dependent KinasesPositive Transcriptional Elongation Factor BRNA Polymerase IISerineCDK-12CDK-9C. elegans

Identifiers

PMID23903194
PMCPMC3742150

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.