Evidence map›Paper›PMID 23900542›Full record

ArticleDevelopment (Cambridge, England)2013

Prdm1a directly activates foxd3 and tfap2a during zebrafish neural crest specification.

Davalyn R Powell, Laura Hernandez-Lagunas, Kristi LaMonica, Kristin Bruk Artinger

Abstract read
In one paragraph

Article in Development (Cambridge, England), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Reactivation of an embryonic cardiac neural crest transcriptional profile during zebrafish heart regeneration.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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  13. Article
  14. Neural crest development: insights from the zebrafish.Developmental dynamics : an official publication of the American Association of Anatomists · 2020
    Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Specifying neural crest cells: From chromatin to morphogens and factors in between.Wiley interdisciplinary reviews. Developmental biology · 2018
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Davalyn R PowellDepartment of Craniofacial Biology, School of Dental Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
Laura Hernandez-Lagunas
Kristi LaMonica
Kristin Bruk Artinger
University of Colorado Anschutz Medical Campus · US

Funding

ZEBRAFISH TRANSGENIC CORE - ROCKY MOUNTAIN NEUROLOGICAL DISORDERS CORE CENTERP30NS048154 · NINDS · UNIVERSITY OF COLORADO DENVER · PI RIBERA, ANGELES BADELL · 2004 to 2020
$10.1M
THE ROLE OF prdm1 IN BRANCHIAL ARCH DEVELOPMENTR01DE017699 · NIDCR · UNIVERSITY OF COLORADO DENVER · PI ARTINGER, KRISTIN · 2007 to 2011
$1.8M
The role of prdm1 in neural cell fate specificationR01HD050698 · NICHD · UNIVERSITY OF COLORADO DENVER · PI ARTINGER, KRISTIN · 2006 to 2010
$1.2M
Determining the molecular mechanism by which prdm1a regulates neural crest specifF31DE022237 · NIDCR · UNIVERSITY OF COLORADO DENVER · PI POWELL, DAVALYN RENEE · 2011 to 2013
$78k
NICHD NIH HHS R01 HD050698NICHD NIH HHS R01HD050698NIDCR NIH HHS F31 DE022237NIDCR NIH HHS F31DE022237NIDCR NIH HHS R01 DE017699NINDS NIH HHS P30 NS048154NINDS NIH HHS P30NS048154
6 · The paper itself

Abstract

The neural crest comprises multipotent precursor cells that are induced at the neural plate border by a series of complex signaling and genetic interactions. Several transcription factors, termed neural crest specifiers, are necessary for early neural crest development; however, the nature of their interactions and regulation is not well understood. Here, we have established that the PR/SET domain-containing transcription factor Prdm1a is co-expressed with two essential neural crest specifiers, foxd3 and tfap2a, at the neural plate border. Through rescue experiments, chromatin immunoprecipitation and reporter assays, we have determined that Prdm1a directly binds to and transcriptionally activates enhancers for foxd3 and tfap2a and that they are functional, direct targets of Prdm1a at the neural plate border. Additionally, analysis of dominant activator and dominant repressor Prdm1a constructs suggests that Prdm1a is required both as a transcriptional activator and transcriptional repressor for neural crest development in zebrafish embryos.

Indexed as

AnimalsBinding SitesBody PatterningDNA-Binding ProteinsEmbryo, NonmammalianFeedback, PhysiologicalForkhead Transcription FactorsGene Expression Regulation, DevelopmentalGene Regulatory NetworksNeural CrestNeural PlateNuclear ProteinsPositive Regulatory Domain I-Binding Factor 1Protein BindingRepressor ProteinsSOXE Transcription FactorsDNA-Binding ProteinsForkhead Transcription Factorsfoxd3 protein, zebrafishNuclear ProteinsPositive Regulatory Domain I-Binding Factor 1prdm1a protein, zebrafishRepressor Proteinssox10 protein, zebrafishSOXE Transcription Factorstfap2a protein, zebrafishTranscription Factor AP-2Zebrafish ProteinsBlimp1Neural crestNeural plate borderPrdm1

Identifiers

PMID23900542
PMCPMC3737723
OpenAlexW2121195205

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.