Evidence map›Paper›PMID 23899293›Full record

ArticleBiochemistry2013

Metal transfer within the Escherichia coli HypB-HypA complex of hydrogenase accessory proteins.

Colin D Douglas, Thanh T Ngu, Harini Kaluarachchi, Deborah B Zamble

Abstract read
In one paragraph

Article in Biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Bimodal Nickel-Binding Site onInorganic chemistry · 2019
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. CO synthesized from the central one-carbon pool as source for the iron carbonyl in O2-tolerant [NiFe]-hydrogenase.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Colin D DouglasDepartment of Chemistry, University of Toronto , 80 St. George St., Toronto, Ontario M5S 3H6, Canada.
Thanh T Ngu
Harini Kaluarachchi
Deborah B Zamble

Funding

CIHR 77644-2
6 · The paper itself

Abstract

The maturation of [NiFe]-hydrogenase in Escherichia coli is a complex process involving many steps and multiple accessory proteins. The two accessory proteins HypA and HypB interact with each other and are thought to cooperate to insert nickel into the active site of the hydrogenase-3 precursor protein. Both of these accessory proteins bind metal individually, but little is known about the metal-binding activities of the proteins once they assemble together into a functional complex. In this study, we investigate how complex formation modulates metal binding to the E. coli proteins HypA and HypB. This work lead to a re-evaluation of the HypA nickel affinity, revealing a KD on the order of 10(-8) M. HypA can efficiently remove nickel, but not zinc, from the metal-binding site in the GTPase domain of HypB, a process that is less efficient when complex formation between HypA and HypB is disrupted. Furthermore, nickel release from HypB to HypA is specifically accelerated when HypB is loaded with GDP, but not GTP. These results are consistent with the HypA-HypB complex serving as a transfer step in the relay of nickel from membrane transporter to its final destination in the hydrogenase active site and suggest that this complex contributes to the metal fidelity of this pathway.

Indexed as

Base SequenceCarrier ProteinsDNA PrimersEscherichia coliEscherichia coli ProteinsGTP-Binding ProteinsHydrogenaseIntracellular Signaling Peptides and ProteinsMetalsSpectrometry, Mass, Electrospray IonizationCarrier ProteinsDNA PrimersEscherichia coli ProteinsGTP-Binding ProteinsHydrogenaseHypA protein, E coliHypB protein, E coliIntracellular Signaling Peptides and ProteinsMetalsnickel-iron hydrogenase

Identifiers

PMID23899293
PMCPMC4457517

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.