Evidence map›Paper›PMID 23898841›Full record

ArticleACS chemical biology2013

Identification of novel inhibitors of nonreplicating Mycobacterium tuberculosis using a carbon starvation model.

Sarah Schmidt Grant, Tomohiko Kawate, Partha P Nag, Melanie R Silvis, Katherine Gordon, Sarah A Stanley, Edward Kazyanskaya, Raymond Nietupski, Aaron Golas, Michael Fitzgerald and 3 more

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 86 citations in OpenAlex.

  1. Article
  2. Article
  3. TowardMicroorganisms · 2024
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Antibiotics (Basel, Switzerland) · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Tools to develop antibiotic combinations that target drug tolerance inFrontiers in cellular and infection microbiology · 2022
    Review
  16. Review
  17. Article
  18. Article
  19. Mycobacterial drug discovery.RSC medicinal chemistry · 2020
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Sarah Schmidt GrantBroad Institute of MIT and Harvard , Cambridge, Massachusetts 02142, United States.
Tomohiko Kawate
Partha P Nag
Melanie R Silvis
Katherine Gordon
Sarah A Stanley
Edward Kazyanskaya
Raymond Nietupski
Aaron Golas
Michael Fitzgerald
Sanghyun Cho
Scott G Franzblau
Deborah T Hung
Broad Institute · USHarvard University · USUniversity of Illinois Chicago · USBrigham and Women's Hospital · USMassachusetts General Hospital · US

Funding

Identifying essential functions in non replicating Mycobacterium tuberculosisK08AI085033 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI GRANT, SARAH S · 2010 to 2013
$549k
Elucidation of physiology of non-replicating, drug-tolerant Mycobacterium tubercuR03MH087444 · NIMH · BROAD INSTITUTE, INC. · PI HUNG, DEBORAH T · 2009 to 2009
$24k
NIAID NIH HHS K08 AI085033NIAID NIH HHS K08AI085033NIMH NIH HHS R03 MH087444NIMH NIH HHS R03MH087444
6 · The paper itself

Abstract

During Mycobacterium tuberculosis infection, a population of bacteria is thought to exist in a nonreplicating state, refractory to antibiotics, which may contribute to the need for prolonged antibiotic therapy. The identification of inhibitors of the nonreplicating state provides tools that can be used to probe this hypothesis and the physiology of this state. The development of such inhibitors also has the potential to shorten the duration of antibiotic therapy required. Here we describe the development of a novel nonreplicating assay amenable to high-throughput chemical screening coupled with secondary assays that use carbon starvation as the in vitro model. Together these assays identify compounds with activity against replicating and nonreplicating M. tuberculosis as well as compounds that inhibit the transition from nonreplicating to replicating stages of growth. Using these assays we successfully screened over 300,000 compounds and identified 786 inhibitors of nonreplicating M. tuberculosis In order to understand the relationship among different nonreplicating models, we tested 52 of these molecules in a hypoxia model, and four different chemical scaffolds in a stochastic persister model, and a streptomycin-dependent model. We found that compounds display varying levels of activity in different models for the nonreplicating state, suggesting important differences in bacterial physiology between models. Therefore, chemical tools identified in this assay may be useful for determining the relevance of different nonreplicating in vitro models to in vivo M. tuberculosis infection. Given our current limited understanding, molecules that are active across multiple models may represent more promising candidates for further development.

Indexed as

Models, BiologicalAntitubercular AgentsCarbonCell CycleFoodMicrobial Sensitivity TestsMolecular StructureMycobacterium tuberculosisSmall Molecule LibrariesAntitubercular AgentsCarbonSmall Molecule Libraries

Identifiers

PMID23898841
PMCPMC3864639
OpenAlexW2071914853

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.