Evidence map›Paper›PMID 23898784›Full record

ArticleBiochemistry2013

Structure of a sugar N-formyltransferase from Campylobacter jejuni.

James B Thoden, Marie-France Goneau, Michel Gilbert, Hazel M Holden

Abstract read
In one paragraph

Article in Biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Misannotations of the genes encoding sugar N-formyltransferases.Protein science : a publication of the Protein Society · 2020
    Article
  4. Investigation of a sugar N-formyltransferase from the plant pathogen Pantoea ananatis.Protein science : a publication of the Protein Society · 2019
    Article
  5. PvdF of pyoverdin biosynthesis is a structurally unique NArchives of biochemistry and biophysics · 2019
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Enzymes required for the biosynthesis of N-formylated sugars.Current opinion in structural biology · 2016
    Review
  13. Article
  14. Article
  15. Molecular structure of an N-formyltransferase from Providencia alcalifaciens O30.Protein science : a publication of the Protein Society · 2015
    Article
  16. Article
  17. Three-dimensional structure of a sugar N-formyltransferase from Francisella tularensis.Protein science : a publication of the Protein Society · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

James B ThodenDepartment of Biochemistry, University of Wisconsin , Madison, Wisconsin 53706, United States.
Marie-France Goneau
Michel Gilbert
Hazel M Holden

Funding

X-ray Studies of Sugar-Modifying EnzymesR01DK047814 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI HOLDEN, HAZEL M. · 1994 to 2015
$4.3M
X-ray Studies of Sugar-Modifying EnzymesR56DK047814 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI HOLDEN, HAZEL · 2006 to 2006
$88k
NIDDK NIH HHS DK47814NIDDK NIH HHS R01 DK047814NIDDK NIH HHS R56 DK047814
6 · The paper itself

Abstract

The O-antigens, which are components of the outer membranes of Gram-negative bacteria, are responsible for the wide species variations seen in nature and are thought to play a role in bacterial virulence. They often contain unusual dideoxysugars such as 3,6-dideoxy-3-formamido-d-glucose (Qui3NFo). Here, we describe a structural and functional investigation of the protein C8J_1081 from Campylobacter jejuni 81116, which is involved in the biosynthesis of Qui3NFo. Specifically, the enzyme, hereafter referred to as WlaRD, catalyzes the N-formylation of dTDP-3,6-dideoxy-3-amino-d-glucose (dTDP-Qui3N) using N(10)-formyltetrahydrofolate as the carbon source. For this investigation, seven X-ray structures of WlaRD, in complexes with various dTDP-linked sugars and cofactors, were determined to resolutions of 1.9 Å or better. One of the models, with bound N(10)-formyltetrahydrofolate and dTDP, represents the first glimpse of an N-formyltransferase with its natural cofactor. Another model contains the reaction products, tetrahydrofolate and dTDP-Qui3NFo. In combination, the structures provide snapshots of the WlaRD active site before and after catalysis. On the basis of these structures, three amino acid residues were targeted for study: Asn 94, His 96, and Asp 132. Mutations of any of these residues resulted in a complete loss of enzymatic activity. Given the position of His 96 in the active site, it can be postulated that it functions as the active site base to remove a proton from the sugar amino group as it attacks the carbonyl carbon of the N-10 formyl group of the cofactor. Enzyme assays demonstrate that WlaRD is also capable of utilizing dTDP-3,6-dideoxy-3-amino-d-galactose (dTDP-Fuc3N) as a substrate, albeit at a much reduced catalytic efficiency.

Indexed as

Base SequenceCampylobacter jejuniCatalytic DomainCrystallography, X-RayDNA PrimersHydroxymethyl and Formyl TransferasesModels, MolecularMutagenesis, Site-DirectedDNA PrimersHydroxymethyl and Formyl Transferases

Identifiers

PMID23898784
PMCPMC3915720

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.