Evidence map›Paper›PMID 23898213›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Metagenomic natural product discovery in lichen provides evidence for a family of biosynthetic pathways in diverse symbioses.

Annette Kampa, Andrey N Gagunashvili, Tobias A M Gulder, Brandon I Morinaka, Cristina Daolio, Markus Godejohann, Vivian P W Miao, Jörn Piel, Ólafur S Andrésson

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed.

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  19. Microbial Communities ofMicroorganisms · 2021
    Article
  20. Discovery of Cyanobacterial Natural Products Containing Fatty Acid Residues*.Angewandte Chemie (International ed. in English) · 2021
    Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Annette KampaKekule Institute of Organic Chemistry and Biochemistry, University of Bonn, 53121 Bonn, Germany.
Andrey N Gagunashvili
Tobias A M Gulder
Brandon I Morinaka
Cristina Daolio
Markus Godejohann
Vivian P W Miao
Jörn Piel
Ólafur S Andrésson

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacteria are a major source of natural products that provide rich opportunities for both chemical and biological investigation. Although the vast majority of known bacterial metabolites derive from free-living organisms, increasing evidence supports the widespread existence of chemically prolific bacteria living in symbioses. A strategy based on bioinformatic prediction, symbiont cultivation, isotopic enrichment, and advanced analytics was used to characterize a unique polyketide, nosperin, from a lichen-associated Nostoc sp. cyanobacterium. The biosynthetic gene cluster and the structure of nosperin, determined from 30 μg of compound, are related to those of the pederin group previously known only from nonphotosynthetic bacteria associated with beetles and marine sponges. The presence of this natural product family in such highly dissimilar associations suggests that some bacterial metabolites may be specific to symbioses with eukaryotes and encourages exploration of other symbioses for drug discovery and better understanding of ecological interactions mediated by complex bacterial metabolites.

Indexed as

Base SequenceBiological ProductsBiosynthetic PathwaysChromatography, High Pressure LiquidCluster AnalysisComputational BiologyData MiningGene ComponentsIcelandLichensMagnetic Resonance SpectroscopyMass SpectrometryMetagenomeMetagenomicsMolecular Sequence DataMolecular StructureBiological ProductsPolyketide Synthases13C nuclear magnetic resonancebiosynthesisPeltigera membranaceatrans-acyltransferase polyketide synthase

Identifiers

PMID23898213
PMCPMC3746887

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.