Evidence map›Paper›PMID 23898207›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

A bacterial symbiont is converted from an inedible producer of beneficial molecules into food by a single mutation in the gacA gene.

Pierre Stallforth, Debra A Brock, Alexandra M Cantley, Xiangjun Tian, David C Queller, Joan E Strassmann, Jon Clardy

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
7.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 67 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Lipopeptide-mediated bacterial interaction enables cooperative predator defense.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  11. The Ecology and Evolution of Amoeba-Bacterium Interactions.Applied and environmental microbiology · 2021
    Review
  12. Article
  13. Article
  14. Can a Symbiont (Also) Be Food?Frontiers in microbiology · 2019
    Article
  15. Article
  16. Article
  17. Synergistic activity of cosecreted natural products from amoebae-associated bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  18. Farming the mitochondrial ancestor as a model of endosymbiotic establishment by natural selection.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Pierre StallforthDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.
Debra A Brock
Alexandra M Cantley
Xiangjun Tian
David C Queller
Joan E Strassmann
Jon Clardy
Washington University in St. Louis · USHarvard University · US

Funding

Molecule-to-gene approaches to new natural productsR01GM086258 · NIGMS · HARVARD MEDICAL SCHOOL · PI CLARDY, JON · 2008 to 2016
$3.6M
NIGMS NIH HHS GM086258NIGMS NIH HHS R01 GM086258
6 · The paper itself

Abstract

Stable multipartite mutualistic associations require that all partners benefit. We show that a single mutational step is sufficient to turn a symbiotic bacterium from an inedible but host-beneficial secondary metabolite producer into a host food source. The bacteria's host is a "farmer" clone of the social amoeba Dictyostelium discoideum that carries and disperses bacteria during its spore stage. Associated with the farmer are two strains of Pseudomonas fluorescens, only one of which serves as a food source. The other strain produces diffusible small molecules: pyrrolnitrin, a known antifungal agent, and a chromene that potently enhances the farmer's spore production and depresses a nonfarmer's spore production. Genome sequence and phylogenetic analyses identify a derived point mutation in the food strain that generates a premature stop codon in a global activator (gacA), encoding the response regulator of a two-component regulatory system. Generation of a knockout mutant of this regulatory gene in the nonfood bacterial strain altered its secondary metabolite profile to match that of the food strain, and also, independently, converted it into a food source. These results suggest that a single mutation in an inedible ancestral strain that served a protective role converted it to a "domesticated" food source.

Indexed as

MutationAmino Acid SequenceBacterial ProteinsBenzopyransChromatography, High Pressure LiquidCodon, NonsenseDictyosteliumGenes, RegulatorHost-Pathogen InteractionsMagnetic Resonance SpectroscopyMolecular Sequence DataMolecular StructurePhylogenyPseudomonas fluorescensPyrrolnitrinSequence Homology, Amino AcidBacterial ProteinsBenzopyransCodon, NonsenseGacA protein, BacteriaPyrrolnitrindifferential metabolomicsGacA–GacS two-component systemsymbiosis

Identifiers

PMID23898207
PMCPMC3767522
OpenAlexW2001185259

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.