Evidence map›Paper›PMID 23898181›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Lipid bilayer and cytoskeletal interactions in a red blood cell.

Zhangli Peng, Xuejin Li, Igor V Pivkin, Ming Dao, George E Karniadakis, Subra Suresh

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
12.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 193 citations in OpenAlex.

  1. Review
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  13. Dynamic mechanisms for membrane skeleton transitions.bioRxiv : the preprint server for biology · 2024
    Article
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  20. μMap-Red: Proximity Labeling by Red Light Photocatalysis.Journal of the American Chemical Society · 2022
    Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Zhangli PengDepartment of Materials Science and Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Xuejin Li
Igor V Pivkin
Ming Dao
George E Karniadakis
Subra Suresh
Brown University · USMassachusetts Institute of Technology · USCarnegie Mellon University · USSIB Swiss Institute of Bioinformatics · CH

Funding

Multiscale Modeling and Parallel Simulations of Blood Flow in Cerebral Malaria anR01HL094270 · NHLBI · BROWN UNIVERSITY · PI KARNIADAKIS, GEORGE, SURESH, SUBRA · 2009 to 2011
$1.8M
NHLBI NIH HHS R01 HL094270NHLBI NIH HHS R01HL094270
6 · The paper itself

Abstract

We study the biomechanical interactions between the lipid bilayer and the cytoskeleton in a red blood cell (RBC) by developing a general framework for mesoscopic simulations. We treated the lipid bilayer and the cytoskeleton as two distinct components and developed a unique whole-cell model of the RBC, using dissipative particle dynamics (DPD). The model is validated by comparing the predicted results with measurements from four different and independent experiments. First, we simulated the micropipette aspiration and quantified the cytoskeletal deformation. Second, we studied the membrane fluctuations of healthy RBCs and RBCs parasitized to different intraerythrocytic stages by the malaria-inducing parasite Plasmodium falciparum. Third, we subjected the RBC to shear flow and investigated the dependence of its tank-treading frequency on shear rate. Finally, we simulated the bilayer-cytoskeletal detachment in channel flow to quantify the strength of such interactions when the corresponding bonds break. Taken together, these experiments and corresponding systematic DPD simulations probe the governing constitutive response of the cytoskeleton, elastic stiffness, viscous friction, and strength of bilayer-cytoskeletal interactions as well as membrane viscosities. Hence, the DPD simulations and comparisons with available independent experiments serve as validation of the unique two-component model and lead to useful insights into the biomechanical interactions between the lipid bilayer and the cytoskeleton of the RBC. Furthermore, they provide a basis for further studies to probe cell mechanistic processes in health and disease in a manner that guides the design and interpretation of experiments and to develop simulations of phenomena that cannot be studied systematically by experiments alone.

Indexed as

Models, BiologicalPlasmodium falciparumBiomechanical PhenomenaComputer SimulationCytoskeletonElasticityErythrocytesHumansLipid BilayersShear StrengthViscosityLipid Bilayersadhesion energycoarse grainingerythrocytemultiscale modelingworm-like chain

Identifiers

PMID23898181
PMCPMC3746879
OpenAlexW2142250017

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.