Evidence map›Paper›PMID 23898027›Full record

ArticleThe Plant cell2013

Genome-scale transcriptomic insights into early-stage fruit development in woodland strawberry Fragaria vesca.

Chunying Kang, Omar Darwish, Aviva Geretz, Rachel Shahan, Nadim Alkharouf, Zhongchi Liu

Abstract read
In one paragraph

Article in The Plant cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 169 papers.

0numbers the graph read from it
0cells of the map it votes in
169citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

169 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Plants (Basel, Switzerland) · 2026
    Article
  5. Article
  6. Strawberry atlas:PeerJ · 2026
    Article
  7. Article
  8. Article
  9. Review
  10. Pectate LyasePlants (Basel, Switzerland) · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Identification of theInternational journal of molecular sciences · 2025
    Article
  15. Review
  16. Article
  17. Integration of ATAC-Seq and RNA-Seq Reveals the Role ofInternational journal of molecular sciences · 2025
    Article
  18. Article
  19. Article
  20. Article

109 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Chunying KangDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland 20742, USA.
Omar Darwish
Aviva Geretz
Rachel Shahan
Nadim Alkharouf
Zhongchi Liu

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fragaria vesca, a diploid woodland strawberry with a small and sequenced genome, is an excellent model for studying fruit development. The strawberry fruit is unique in that the edible flesh is actually enlarged receptacle tissue. The true fruit are the numerous dry achenes dotting the receptacle's surface. Auxin produced from the achene is essential for the receptacle fruit set, a paradigm for studying crosstalk between hormone signaling and development. To investigate the molecular mechanism underlying strawberry fruit set, next-generation sequencing was employed to profile early-stage fruit development with five fruit tissue types and five developmental stages from floral anthesis to enlarged fruits. This two-dimensional data set provides a systems-level view of molecular events with precise spatial and temporal resolution. The data suggest that the endosperm and seed coat may play a more prominent role than the embryo in auxin and gibberellin biosynthesis for fruit set. A model is proposed to illustrate how hormonal signals produced in the endosperm and seed coat coordinate seed, ovary wall, and receptacle fruit development. The comprehensive fruit transcriptome data set provides a wealth of genomic resources for the strawberry and Rosaceae communities as well as unprecedented molecular insight into fruit set and early stage fruit development.

Indexed as

TranscriptomeCluster AnalysisEndospermFlowersFragariaFruitGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantGenome, PlantGibberellinsIndoleacetic AcidsOligonucleotide Array Sequence AnalysisPhylogenyPlant ProteinsTime FactorsGibberellinsIndoleacetic AcidsPlant Proteins

Identifiers

PMID23898027
PMCPMC3723606

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.