Evidence map›Paper›PMID 23897923›Full record

ArticleThe Plant cell2013

Submergence confers immunity mediated by the WRKY22 transcription factor in Arabidopsis.

Fu-Chiun Hsu, Mei-Yi Chou, Shu-Jen Chou, Ya-Ru Li, Hsiao-Ping Peng, Ming-Che Shih

Open access · greenAbstract read
In one paragraph

Article in The Plant cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 108 papers.

0numbers the graph read from it
0cells of the map it votes in
108citing papers in PubMed
16.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

108 citing papers in PubMed, 247 citations in OpenAlex.

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  13. Phenotypic, Metabolic and Genetic Adaptations of theInternational journal of molecular sciences · 2024
    Review
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  20. Review

48 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Fu-Chiun HsuAgricultural Biotechnology Research Center, Academia Sinica, Taipei 115, Taiwan.
Mei-Yi Chou
Shu-Jen Chou
Ya-Ru Li
Hsiao-Ping Peng
Ming-Che Shih
Academia Sinica · TWAgricultural Biotechnology Research Center, Academia Sinica · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transcriptional control plays an important role in regulating submergence responses in plants. Although numerous genes are highly induced during hypoxia, their individual roles in hypoxic responses are still poorly understood. Here, we found that expression of genes that encode members of the WRKY transcription factor family was rapidly and strongly induced upon submergence in Arabidopsis thaliana, and this induction correlated with induction of a large portion of innate immunity marker genes. Furthermore, prior submergence treatment conferred higher resistance to the bacterial pathogen Pseudomonas syringae in Arabidopsis. Among the WRKY genes tested, WRKY22 had the highest level of induction during the early stages of submergence. Compared with the wild type, WRKY22 T-DNA insertion mutants wrky22-1 and wrky22-2 had lower disease resistance and lower induction of innate immunity markers, such as FLG22-INDUCED RECEPTOR-LIKE KINASE1 (FRK1) and WRKY53, after submergence. Furthermore, transcriptomic analyses of wrky22-2 and chromatin immunoprecipitation identified several potential targets of WRKY22, which included genes encoding a TIR domain-containing protein, a plant peptide hormone, and many OLIGO PEPTIDE TRANSPORTER genes, all of which may lead to induction of innate immunity. In conclusion, we propose that submergence triggers innate immunity in Arabidopsis via WRKY22, a response that may protect against a higher probability of pathogen infection either during or after flooding.

Indexed as

ArabidopsisArabidopsis ProteinsBlotting, WesternDisease ResistanceDNA, BacterialDNA-Binding ProteinsGene Expression Regulation, PlantGene Regulatory NetworksHost-Pathogen InteractionsImmersionModels, GeneticMutagenesis, InsertionalOxygenPlant DiseasesPlants, Genetically ModifiedProtein KinasesArabidopsis ProteinsDNA, BacterialDNA-Binding ProteinsFRK1 protein, ArabidopsisOxygenProtein KinasesT-DNATranscription FactorsWRKY22 protein, ArabidopsisWRKY53 protein, Arabidopsis

Identifiers

PMID23897923
PMCPMC3753392
OpenAlexW2145131352

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.