Evidence map›Paper›PMID 23897812›Full record

ArticleThe Journal of biological chemistry2013

Discovery of Streptococcus pneumoniae serotype 6 variants with glycosyltransferases synthesizing two differing repeating units.

Melissa B Oliver, Mark P G van der Linden, Sharon A Küntzel, Jamil S Saad, Moon H Nahm

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 80 citations in OpenAlex.

  1. Accurate serotype identification ofJournal of clinical microbiology · 2026
    Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Carbon source-dependent capsule thickness regulation inFrontiers in cellular and infection microbiology · 2023
    Article
  7. Article
  8. Article
  9. Carbon Source-Dependent Changes of the Structure ofInternational journal of molecular sciences · 2021
    Article
  10. Review
  11. Synthesis and delivery ofProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. Carbon source regulates polysaccharide capsule biosynthesis inThe Journal of biological chemistry · 2019
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Melissa B OliverPathology, University of Alabama at Birmingham, Birmingham, Alabama 35294 and.
Mark P G van der Lindenthe Department of Medical Microbiology, German National Reference Center for Streptococci, University Hospital Rheinisch-Westfälische Technische Hochschule, D-52074 Aachen, Germany.
Sharon A Küntzelthe Department of Medical Microbiology, German National Reference Center for Streptococci, University Hospital Rheinisch-Westfälische Technische Hochschule, D-52074 Aachen, Germany.
Jamil S SaadFrom the Departments of Microbiology and.
Moon H NahmPathology, University of Alabama at Birmingham, Birmingham, Alabama 35294 and; From the Departments of Microbiology and. Electronic address: nahm@uab.edu.
University of Alabama at Birmingham · USWestfälische Hochschule · DE

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Robert S Welner · 1985 to 2026
$165.9M
Impact of a new group 6 serotype on pneumococcal vaccinesR01AI031473 · NIAID · WASHINGTON UNIVERSITY · PI NAHM, MOON H. · 1991 to 2011
$1.7M
NCI NIH HHS P30 CA013148NCI NIH HHS P30CA013148NIAID NIH HHS R01 AI031473NIAID NIH HHS R01 AI-31473
6 · The paper itself

Abstract

Streptococcus pneumoniae is a persistent, opportunistic commensal of the human nasopharynx and is the leading cause of community-acquired pneumonia. It expresses an anti-phagocytic capsular polysaccharide (PS). Genetic variation of the capsular PS synthesis (cps) locus is the molecular basis for structural and antigenic heterogeneity of capsule types (serotypes). Serogroup 6 has four known members (6A-6D) with distinct serologic properties, homologous cps loci, and structurally similar PSs. cps of serotypes 6A/6B have wciNα, encoding α-1,3-galactosyltransferase, whereas serotypes 6C/6D have wciNβ encoding α-1,3-glucosyltransferase. Two atypical serogroup 6 isolates (named 6X11 and 6X12) have been discovered recently in Germany. Flow cytometric studies using monoclonal antibodies show that 6X11 has serologic properties of 6B/6D, whereas 6X12 has 6A/6C. NMR studies of their capsular PSs revealed that 6X11 and 6X12 have two different repeating units with a distribution of ~40:60 6B:6D and 75:25 6A:6C PS, respectively. Sequencing of the wciNα gene in 6X12 and 6X11 revealed single and double nucleotide substitutions, respectively, resulting in the amino acid changes A150T and D38N. Substitution of alanine with threonine at position 150 in a 6A strain was associated with hybrid serologic and chemical profiles like 6X12. The hybrid serotypes represented by 6X12 and 6X11 strains are now named serotypes 6F and 6G. Single amino acid changes in cps genes encoding glycosyltransferases can alter substrate specificities, permit biosynthesis of heterogeneous capsule repeating units, and result in new hybrid capsule types that may differ in their interaction with the immune system of the host.

Indexed as

Mutation, MissenseAmino Acid SubstitutionBacterial CapsulesBacterial ProteinsGenetic LociGlycosyltransferasesHumansMagnetic Resonance SpectroscopyStreptococcus pneumoniaeBacterial ProteinsGlycosyltransferasesAmino AcidBispecific TransferaseCapsular PolysaccharideEnzyme MutationGlycosyltransferasesMolecular EvolutionNMRPolysaccharideStreptococcus pneumoniaewciN

Identifiers

PMID23897812
PMCPMC3764802
OpenAlexW1994522011

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.