Evidence map›Paper›PMID 23895395›Full record

ArticleBMC genomics2013

Transcriptomic and proteomic analysis of a compatible tomato-aphid interaction reveals a predominant salicylic acid-dependent plant response.

Valentina Coppola, Mariangela Coppola, Mariapina Rocco, Maria Cristina Digilio, Chiara D'Ambrosio, Giovanni Renzone, Rosanna Martinelli, Andrea Scaloni, Francesco Pennacchio, Rosa Rao and 1 more

Abstract readValidation Study
In one paragraph

Article in BMC genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Proteomic analysis may explain differences inPlant signaling & behavior · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Tomato Aphid (International journal of molecular sciences · 2023
    Article
  8. Article
  9. A Novel Protein Elicitor (PELL1) Extracted fromBioMed research international · 2022
    Article
  10. Molecular mechanisms of resistance toFrontiers in plant science · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Valentina CoppolaDipartimento di Agraria, Università degli Studi di Napoli Federico II, 80055 Portici, NA, Italy.
Mariangela Coppola
Mariapina Rocco
Maria Cristina Digilio
Chiara D'Ambrosio
Giovanni Renzone
Rosanna Martinelli
Andrea Scaloni
Francesco Pennacchio
Rosa Rao
Giandomenico Corrado

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAphids are among the most destructive pests in temperate climates, causing significant damage on several crops including tomato. We carried out a transcriptomic and proteomic study to get insights into the molecular mechanisms and dynamics of the tomato response to the Macrosyphum euphorbiae aphid.

resultsThe time course analysis of aphid infestation indicated a complex, dynamic pattern of gene expression. Several biological functions were affected and genes related to the stress and defence response were the most represented. The Gene Ontology categories of the differentially expressed genes (899) and identified proteins (57) indicated that the tomato response is characterized by an increased oxidative stress accompanied by the production of proteins involved in the detoxification of oxygen radicals. Aphids elicit a defense reaction based on the cross-communication of different hormone-related signaling pathways such as those related to the salicylic acid (SA), jasmonic acid (JA), ethylene and brassinosteroids. Among them, the SA-signaling pathway and stress-responsive SA-dependent genes play a dominant role. Furthermore, tomato response is characterized by a reduced accumulation of photosynthetic proteins and a modification of the expression of various cell wall related genes.

conclusionsOur work allowed a more comprehensive understanding of the signaling events and the defense dynamics of the tomato response to aphids in a compatible interaction and, based on experimental data, a model of the tomato-aphid molecular interaction was proposed. Considering the rapid advancement of tomato genomics, this information will be important for the development of new protection strategies.

Indexed as

ProteomicsTranscriptomeAnimalsAphidsGene Expression ProfilingPolymerase Chain ReactionSalicylic AcidSolanum lycopersicumSalicylic Acid

Identifiers

PMID23895395
PMCPMC3733717

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.