Evidence map›Paper›PMID 23894646›Full record

ArticlePloS one2013

Evolution of chloroplast J proteins.

Chi-Chou Chiu, Lih-Jen Chen, Pai-Hsiang Su, Hsou-min Li

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 42 citations in OpenAlex.

  1. Pooled it
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  5. The Shared Proteome of the Apomictic FernInternational journal of molecular sciences · 2022
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  8. Screening and Identification of Candidate GUN1-Interacting Proteins inInternational journal of molecular sciences · 2021
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  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Improved lipid productivity inBiotechnology for biofuels · 2020
    Article
  15. Review
  16. The expanding world of plant J-domain proteins.Critical reviews in plant sciences · 2019
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Chi-Chou ChiuInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan.
Lih-Jen Chen
Pai-Hsiang Su
Hsou-min Li
Institute of Molecular Biology, Academia Sinica · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hsp70 chaperones are involved in multiple biological processes and are recruited to specific processes by designated J domain-containing cochaperones, or J proteins. To understand the evolution and functions of chloroplast Hsp70s and J proteins, we identified the Arabidopsis chloroplast J protein constituency using a combination of genomic and proteomic database searches and individual protein import assays. We show that Arabidopsis chloroplasts have at least 19 J proteins, the highest number of confirmed J proteins for any organelle. These 19 J proteins are classified into 11 clades, for which cyanobacteria and glaucophytes only have homologs for one clade, green algae have an additional three clades, and all the other 7 clades are specific to land plants. Each clade also possesses a clade-specific novel motif that is likely used to interact with different client proteins. Gene expression analyses indicate that most land plant-specific J proteins show highly variable expression in different tissues and are down regulated by low temperatures. These results show that duplication of chloroplast Hsp70 in land plants is accompanied by more than doubling of the number of its J protein cochaperones through adding new J proteins with novel motifs, not through duplications within existing families. These new J proteins likely recruit chloroplast Hsp70 to perform tissue specific functions related to biosynthesis rather than to stress resistance.

Indexed as

Evolution, MolecularPhylogenyArabidopsisArabidopsis ProteinsChloroplast ProteinsChloroplastsConserved SequenceCyanobacteriaGene Expression Regulation, PlantGenome, PlantHSP70 Heat-Shock ProteinsMolecular ChaperonesMolecular Sequence DataPlantsProteomicsStress, PhysiologicalArabidopsis ProteinsChloroplast ProteinsHSP70 Heat-Shock ProteinsMolecular Chaperones

Identifiers

PMID23894646
PMCPMC3720927
OpenAlexW2119420461

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.