Evidence map›Paper›PMID 23894195›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2013

Antimitochondrial antibody recognition and structural integrity of the inner lipoyl domain of the E2 subunit of pyruvate dehydrogenase complex.

Jinjun Wang, Madhu S Budamagunta, John C Voss, Mark J Kurth, Kit S Lam, Ling Lu, Thomas P Kenny, Christopher Bowlus, Kentaro Kikuchi, Ross L Coppel and 3 more

Abstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Animal Models of Autoimmune Liver Diseases: a Comprehensive Review.Clinical reviews in allergy & immunology · 2020
    Review
  7. Review
  8. Pathogen infections and primary biliary cholangitis.Clinical and experimental immunology · 2019
    Review
  9. Biomarkers for primary biliary cholangitis: current perspectives.Hepatic medicine : evidence and research · 2018
    Review
  10. Environmental basis of primary biliary cholangitis.Experimental biology and medicine (Maywood, N.J.) · 2018
    Review
  11. Article
  12. Article
  13. Diagnostic autoantibodies for autoimmune liver diseases.Clinical & translational immunology · 2017
    Review
  14. Article
  15. Review
  16. Review
  17. Review
  18. Review
  19. Evaluation of indeterminate biliary strictures.Nature reviews. Gastroenterology & hepatology · 2016
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Jinjun WangDivision of Rheumatology, Allergy and Clinical Immunology, University of California Davis, Davis, CA 95616, USA.
Madhu S Budamagunta
John C Voss
Mark J Kurth
Kit S Lam
Ling Lu
Thomas P Kenny
Christopher Bowlus
Kentaro Kikuchi
Ross L Coppel
Aftab A Ansari
M Eric Gershwin
Patrick S C Leung

Funding

XENOBIOTICS AND PRIMARY BILIARY CIRRHOSISR01DK067003 · NIDDK · UNIVERSITY OF CALIFORNIA DAVIS · PI GERSHWIN, MERRILL E · 2003 to 2017
$4.4M
MECHANISMS AND PATHOGENESIS OF PRIMARY BILIARY CIRRHOSISR37DK039588 · NIDDK · UNIVERSITY OF CALIFORNIA DAVIS · PI GERSHWIN, MERRILL E · 2001 to 2010
$3.5M
MECHANISMS AND PATHOGENESIS OF PRIMARY BILIARY CIRRHOSISR01DK039588 · NIDDK · UNIVERSITY OF CALIFORNIA DAVIS · PI GERSHWIN, MERRILL E · 1988 to 2015
$2.0M
NIDDK NIH HHS DK067003NIDDK NIH HHS DK39588NIDDK NIH HHS R01 DK039588NIDDK NIH HHS R01 DK067003NIDDK NIH HHS R37 DK039588
6 · The paper itself

Abstract

Antimitochondrial autoantibodies (AMAs), the serological hallmark of primary biliary cirrhosis, are directed against the lipoyl domain of the E2 subunit of pyruvate dehydrogenase (PDC-E2). However, comprehensive analysis of the amino acid residues of PDC-E2 lipoyl β-sheet with AMA specificity is lacking. In this study, we postulated that specific residues within the lipoyl domain are critical to AMA recognition by maintaining conformational integrity. We systematically replaced each of 19 residue peptides of the inner lipoyl domain with alanine and analyzed these mutants for reactivities against 60 primary biliary cirrhosis and 103 control sera. Based on these data, we then constructed mutants with two, three, or four replacements and, in addition, probed the structure of the substituted domains using thiol-specific spin labeling and electron paramagnetic resonance (EPR) of a (5)Ile→Ala and (12)Ile→Ala double mutant. Single alanine replacement at (5)Ile, (12)Ile, and (15)Glu significantly reduced AMA recognition. In addition, mutants with two, three, or four replacements at (5)Ile, (12)Ile, and (15)Glu reduced AMA reactivity even further. Indeed, EPR reveals a highly flexible structure within the (5)Ile and (12)Ile double-alanine mutant. Autoreactivity is largely focused on specific residues in the PDC-E2 lipoyl domain critical in maintaining the lipoyl loop conformation necessary for AMA recognition. Collectively, the AMA binding studies and EPR analysis demonstrate the necessity of the lipoyl β-sheet structural conformation in anti-PDC-E2 recognition.

Indexed as

Amino Acid SequenceAntibody SpecificityAutoantibodiesAutoantigensDihydrolipoyllysine-Residue AcetyltransferaseElectron Spin Resonance SpectroscopyHumansLiver Cirrhosis, BiliaryMitochondriaMolecular Sequence DataMutagenesis, Site-DirectedProtein Structure, SecondaryProtein Structure, TertiaryAutoantibodiesAutoantigensDihydrolipoyllysine-Residue Acetyltransferase

Identifiers

PMID23894195
PMCPMC3759514

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.