Evidence map›Paper›PMID 23894142›Full record

ArticleBioinformatics (Oxford, England)2013

MaGnET: Malaria Genome Exploration Tool.

Joanna L Sharman, Dietlind L Gerloff

Open access · greenAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Bioinformatics (Oxford, England), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. HDACiDB: a database for histone deacetylase inhibitors.Drug design, development and therapy · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 2 countries.

Joanna L SharmanThe University/BHF Centre for Cardiovascular Science, University of Edinburgh, Edinburgh, EH16 4TJ, UK. joanna.sharman@ed.ac.uk
Dietlind L Gerloff
University of Edinburgh · GB

Funding

In Silico and in Vitro Investigation of Non-Conserved Interaction CharacteristicsR21GM100303 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI GERLOFF, DIETLIND L., LIBERLES, DAVID A. · 2012 to 2013
$406k
Medical Research CouncilNIGMS NIH HHS R21 GM100303NIGMS NIH HHS R21GM100303
6 · The paper itself

Abstract

summaryThe Malaria Genome Exploration Tool (MaGnET) is a software tool enabling intuitive 'exploration-style' visualization of functional genomics data relating to the malaria parasite, Plasmodium falciparum. MaGnET provides innovative integrated graphic displays for different datasets, including genomic location of genes, mRNA expression data, protein-protein interactions and more. Any selection of genes to explore made by the user is easily carried over between the different viewers for different datasets, and can be changed interactively at any point (without returning to a search). AVAILABILITY AND IMPLEMENTATION: Free online use (Java Web Start) or download (Java application archive and MySQL database; requires local MySQL installation) at http://malariagenomeexplorer.org CONTACT: joanna.sharman@ed.ac.uk or dgerloff@ffame.org SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

Indexed as

Genome, ProtozoanSoftwareGenomicsPlasmodium falciparumProtozoan ProteinsProtozoan Proteins

Identifiers

PMID23894142
PMCPMC3753565
OpenAlexW2156560811

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.