ArticleMolecular biology and evolution2013
Evolution of the class IV HD-zip gene family in streptophytes.
Article in Molecular biology and evolution, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed, 43 citations in OpenAlex.
- PWO proteins are associated with PRC2 since their emergence in vascular plants.The New phytologist · 2026Article
- Evolutionary Diversification and Adaptive Evolution Analysis of the Plant HD-Zip IV Subfamily.Genes · 2025Article
- Domain characteristics, classification and expression profiles in response to various abiotic stresses of four HD-Zip subfamilies in tea plant.BMC plant biology · 2025Article
- Evolution of HD-ZIP transcription factors and their function in cabbage leafy head formation.Frontiers in plant science · 2025Article
- Genome-wide characterization and expression profiling of the HD-ZIP gene family in Acoraceae under salinity and cold stress.Frontiers in plant science · 2024Article
- HD-Zip IV transcription factors: Drivers of epidermal cell fate integrate metabolic signals.Current opinion in plant biology · 2023Review
- Transcription factors NtHD9 and NtHD12 control long glandular trichome formation via jasmonate signaling.Plant physiology · 2023Article
- Cavity architecture based modulation of ligand binding tunnels in plant START domains.Computational and structural biotechnology journal · 2023Article
- Genome-wide analysis of the homeodomain-leucine zipper family inFrontiers in plant science · 2022Article
- Origin, Expansion, and Divergence of ETHYLENE-INSENSITIVE 3 (EIN3)/EIN3-LIKE Transcription Factors During Streptophytes Evolution.Frontiers in plant science · 2022Article
- The URL1-ROC5-TPL2 transcriptional repressor complex represses the ACL1 gene to modulate leaf rolling in rice.Plant physiology · 2021Article
- Genome-wide characterization of NtHD-ZIP IV: different roles in abiotic stress response and glandular Trichome induction.BMC plant biology · 2019Article
- Negative regulation of conservedeLife · 2018Article
- Transcriptome-Wide Survey and Expression Profile Analysis of Putative Chrysanthemum HD-Zip I and II Genes.Genes · 2016Article
- Genome-Wide Identification and Expression Analysis of Homeodomain Leucine Zipper Subfamily IV (HDZ IV) Gene Family from Musa accuminata.Frontiers in plant science · 2016Article
- Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana.Plant physiology · 2015Article
- A Simple Auxin Transcriptional Response System Regulates Multiple Morphogenetic Processes in the Liverwort Marchantia polymorpha.PLoS genetics · 2015Article
- Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress.BMC genomics · 2014Article
- Green algae and the origins of multicellularity in the plant kingdom.Cold Spring Harbor perspectives in biology · 2014Review
- The OCL3 promoter from Sorghum bicolor directs gene expression to abscission and nutrient-transfer zones at the bases of floral organs.Annals of botany · 2014Article
Corrections and comments
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Authors and funding
6 authors at 4 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Class IV homeodomain leucine zipper (C4HDZ) genes are plant-specific transcription factors that, based on phenotypes in Arabidopsis thaliana, play an important role in epidermal development. In this study, we sampled all major extant lineages and their closest algal relatives for C4HDZ homologs and phylogenetic analyses result in a gene tree that mirrors land plant evolution with evidence for gene duplications in many lineages, but minimal evidence for gene losses. Our analysis suggests an ancestral C4HDZ gene originated in an algal ancestor of land plants and a single ancestral gene was present in the last common ancestor of land plants. Independent gene duplications are evident within several lineages including mosses, lycophytes, euphyllophytes, seed plants, and, most notably, angiosperms. In recently evolved angiosperm paralogs, we find evidence of pseudogenization via mutations in both coding and regulatory sequences. The increasing complexity of the C4HDZ gene family through the diversification of land plants correlates to increasing complexity in epidermal characters.
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Registered trials
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