Evidence map›Paper›PMID 23892781›Full record

ArticleNature2013

Avoiding chromosome pathology when replication forks collide.

Christian J Rudolph, Amy L Upton, Anna Stockum, Conrad A Nieduszynski, Robert G Lloyd

Abstract read
In one paragraph

Article in Nature, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed, 134 citations in OpenAlex.

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30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Christian J RudolphCentre for Genetics and Genomics, University of Nottingham, Queen's Medical Centre, Nottingham NG7 2UH, UK. christian.rudolph@brunel.ac.uk
Amy L Upton
Anna Stockum
Conrad A Nieduszynski
Robert G Lloyd
University of Nottingham · GBQueen's Medical Centre · GBUniversity of Oxford · GB

Funding

Biotechnology and Biological Sciences Research Council BB/E023754/1Medical Research Council G0800970
6 · The paper itself

Abstract

Chromosome duplication normally initiates through the assembly of replication fork complexes at defined origins. DNA synthesis by any one fork is thought to cease when it meets another travelling in the opposite direction, at which stage the replication machinery may simply dissociate before the nascent strands are finally ligated. But what actually happens is not clear. Here we present evidence consistent with the idea that every fork collision has the potential to threaten genomic integrity. In Escherichia coli this threat is kept at bay by RecG DNA translocase and by single-strand DNA exonucleases. Without RecG, replication initiates where forks meet through a replisome assembly mechanism normally associated with fork repair, replication restart and recombination, establishing new forks with the potential to sustain cell growth and division without an active origin. This potential is realized when roadblocks to fork progression are reduced or eliminated. It relies on the chromosome being circular, reinforcing the idea that replication initiation is triggered repeatedly by fork collision. The results reported raise the question of whether replication fork collisions have pathogenic potential for organisms that exploit several origins to replicate each chromosome.

Indexed as

DNA ReplicationReplication OriginBacterial ProteinsBacteriophagesChromosomes, BacterialDNA, BacterialDNA-Binding ProteinsDNA, CircularDNA HelicasesDNA, Single-StrandedEscherichia coliEscherichia coli ProteinsExodeoxyribonuclease VExonucleasesGenetic MarkersGenomic InstabilityBacterial ProteinsDnaA protein, BacteriaDNA, BacterialDNA-Binding ProteinsDNA, CircularDNA HelicasesDNA, Single-StrandedEscherichia coli ProteinsExodeoxyribonuclease VExonucleasesGenetic MarkerspriA protein, E coliRecG protein, E coli

Identifiers

PMID23892781
PMCPMC3819906
OpenAlexW1968288171

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.