Evidence map›Paper›PMID 23892752›Full record

ArticleApplied and environmental microbiology2013

Construction of a prophage-free variant of Corynebacterium glutamicum ATCC 13032 for use as a platform strain for basic research and industrial biotechnology.

Meike Baumgart, Simon Unthan, Christian Rückert, Jasintha Sivalingam, Alexander Grünberger, Jörn Kalinowski, Michael Bott, Stephan Noack, Julia Frunzke

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed.

  1. The mycomembrane proteins PorH and ProtX are inserted at polar growth zones and linked to the cell wall.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  6. Systems metabolic engineering ofSynthetic and systems biotechnology · 2025
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  7. A diverse single-stranded DNA-annealing protein library enables efficient genome editing across bacterial phyla.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  11. Response surface-based media optimization for astaxanthin production inFrontiers in bioengineering and biotechnology · 2025
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  12. Genome streamlining ofmSystems · 2024
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  13. Metabolic Profile of the Genome-ReducedACS synthetic biology · 2024
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  16. Promising non-model microbial cell factories obtained by genome reduction.Frontiers in bioengineering and biotechnology · 2024
    Review
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  18. Genome reduction inFrontiers in bioengineering and biotechnology · 2024
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  19. Exploring the secretome ofFrontiers in bioengineering and biotechnology · 2024
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  20. Crystal Structures of 6-Phosphogluconate Dehydrogenase fromJournal of microbiology and biotechnology · 2023
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26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Meike BaumgartInstitute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum Jülich, Jülich, Germany.
Simon Unthan
Christian Rückert
Jasintha Sivalingam
Alexander Grünberger
Jörn Kalinowski
Michael Bott
Stephan Noack
Julia Frunzke

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The activity of bacteriophages and phage-related mobile elements is a major source for genome rearrangements and genetic instability of their bacterial hosts. The genome of the industrial amino acid producer Corynebacterium glutamicum ATCC 13032 contains three prophages (CGP1, CGP2, and CGP3) of so far unknown functionality. Several phage genes are regularly expressed, and the large prophage CGP3 (∼190 kbp) has recently been shown to be induced under certain stress conditions. Here, we present the construction of MB001, a prophage-free variant of C. glutamicum ATCC 13032 with a 6% reduced genome. This strain does not show any unfavorable properties during extensive phenotypic characterization under various standard and stress conditions. As expected, we observed improved growth and fitness of MB001 under SOS-response-inducing conditions that trigger CGP3 induction in the wild-type strain. Further studies revealed that MB001 has a significantly increased transformation efficiency and produced about 30% more of the heterologous model protein enhanced yellow fluorescent protein (eYFP), presumably as a consequence of an increased plasmid copy number. These effects were attributed to the loss of the restriction-modification system (cg1996-cg1998) located within CGP3. The deletion of the prophages without any negative effect results in a novel platform strain for metabolic engineering and represents a useful step toward the construction of a C. glutamicum chassis genome of strain ATCC 13032 for biotechnological applications and synthetic biology.

Indexed as

Sequence DeletionBacterial ProteinsBiotechnologyCorynebacterium glutamicumDNA, BacterialDNA Restriction-Modification EnzymesGene DosageGenetics, MicrobialGenomic InstabilityLuminescent ProteinsMicrobial ViabilityMolecular Sequence DataPlasmidsProphagesRecombinant ProteinsSequence Analysis, DNABacterial ProteinsDNA, BacterialDNA Restriction-Modification EnzymesLuminescent ProteinsRecombinant Proteinsyellow fluorescent protein, Bacteria

Identifiers

PMID23892752
PMCPMC3811366

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.