Evidence map›Paper›PMID 23892606›Full record

ArticleNature genetics2013

Passage through the mammalian gut triggers a phenotypic switch that promotes Candida albicans commensalism.

Kalyan Pande, Changbin Chen, Suzanne M Noble

Abstract read
In one paragraph

Article in Nature genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 194 papers.

0numbers the graph read from it
0cells of the map it votes in
194citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

194 citing papers in PubMed.

  1. Article
  2. Article
  3. The unique Efg1 fungal virulence regulon in the catheterized bladder environment.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Is Cryptococcus neoformans a pleomorphic fungus?Current opinion in microbiology · 2024
    Review
  16. Review
  17. ControllingInfection and immunity · 2024
    Review
  18. The rod cell, a small form ofActa biochimica et biophysica Sinica · 2024
    Article
  19. Review
  20. Microbiology and molecular biology reviews : MMBR · 2024
    Review

134 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Kalyan PandeDepartment of Microbiology and Immunology, University of California at San Francisco, San Francisco, California, USA.
Changbin Chen
Suzanne M Noble

Funding

The Candida albicans commensal programR21AI099659 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI NOBLE, SUZANNE M · 2012 to 2013
$425k
NIAID NIH HHS R21 AI099659NIAID NIH HHS R21AI099659-01
6 · The paper itself

Abstract

Among ∼5,000,000 fungal species, C. albicans is exceptional in its lifelong association with humans, either within the gastrointestinal microbiome or as an invasive pathogen. Opportunistic infections are generally ascribed to defective host immunity but may require specific microbial programs. Here we report that exposure of C. albicans to the mammalian gut triggers a developmental switch, driven by the Wor1 transcription factor, to a commensal cell type. Wor1 expression was previously observed only in rare genetic backgrounds, where it controls a white-opaque switch in mating. We show that passage of wild-type cells through the mouse gastrointestinal tract triggers WOR1 expression and a novel phenotypic switch. The resulting GUT (gastrointestinally induced transition) cells differ morphologically and functionally from previously defined cell types, including opaque cells, and express a transcriptome that is optimized for the digestive tract. The white-GUT switch illuminates how a microorganism can use distinct genetic programs to transition between commensalism and invasive pathogenesis.

Indexed as

PhenotypeAnimalsCandida albicansFemaleFungal ProteinsGastrointestinal TractGene Expression ProfilingGene Expression Regulation, FungalGenetic FitnessHumansMiceMutationFungal Proteins

Identifiers

PMID23892606
PMCPMC3758371

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.