Evidence map›Paper›PMID 23891989›Full record

ArticleNanomedicine : nanotechnology, biology, and medicine2014

Electrokinetic stringency control in self-assembled monolayer-based biosensors for multiplex urinary tract infection diagnosis.

Tingting Liu, Mandy L Y Sin, Jeff D Pyne, Vincent Gau, Joseph C Liao, Pak Kin Wong

Abstract read
In one paragraph

Article in Nanomedicine : nanotechnology, biology, and medicine, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Aluminum Oxide-Coated Particle Differentiation Employing Supervised Machine Learning and Impedance Cytometry.IEEE International Conference on Nano/Micro Engineered and Molecular Systems. IEEE International Conference on Nano/Micro Engineered and Molecular Systems · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. Long-range electrothermal fluid motion in microfluidic systems.International journal of heat and mass transfer · 2016
    Article
  9. Article
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Tingting LiuDepartment of Aerospace and Mechanical Engineering, University of Arizona, Tucson, AZ, USA.
Mandy L Y SinDepartment of Aerospace and Mechanical Engineering, University of Arizona, Tucson, AZ, USA; Department of Urology, Stanford University, Stanford, CA, USA.
Jeff D PyneDepartment of Aerospace and Mechanical Engineering, University of Arizona, Tucson, AZ, USA.
Vincent GauGeneFluidics Inc., Irwindale, CA, USA.
Joseph C LiaoDepartment of Urology, Stanford University, Stanford, CA, USA; Veterans Affairs Palo Alto Health Care System, Palo Alto, CA, USA.
Pak Kin WongDepartment of Aerospace and Mechanical Engineering, University of Arizona, Tucson, AZ, USA. Electronic address: pak@email.arizona.edu.
University of Arizona · USGeneFluidics (United States) · USStanford University · US

Funding

An Integrated Diagnostic Biochip for Point of Care Pathogen IdentificationU01AI082457 · NIAID · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI LIAO, JOSEPH C · 2009 to 2013
$3.7M
An Integrated Diagnostic System for Rapid Antimicrobial Susceptibility TestingR44AI088756 · NIAID · GENEFLUIDICS, INC. · PI GAU, VINCENT JEN-JR · 2012 to 2014
$3.0M
Mechanoregulation of Tissue MorphogenesisDP2OD007161 · OD · UNIVERSITY OF ARIZONA · PI WONG, PAK KIN · 2010 to 2010
$2.3M
NIAID NIH HHS 1U01AI082457-01NIAID NIH HHS 2R44AI088756-03NIAID NIH HHS R44 AI088756NIAID NIH HHS U01 AI082457NIH HHS 1DP2OD007161-01NIH HHS DP2 OD007161
6 · The paper itself

Abstract

Rapid detection of bacterial pathogens is critical toward judicious management of infectious diseases. Herein, we demonstrate an in situ electrokinetic stringency control approach for a self-assembled monolayer-based electrochemical biosensor toward urinary tract infection diagnosis. The in situ electrokinetic stringency control technique generates Joule heating induced temperature rise and electrothermal fluid motion directly on the sensor to improve its performance for detecting bacterial 16S rRNA, a phylogenetic biomarker. The dependence of the hybridization efficiency reveals that in situ electrokinetic stringency control is capable of discriminating single-base mismatches. With electrokinetic stringency control, the background noise due to the matrix effects of clinical urine samples can be reduced by 60%. The applicability of the system is demonstrated by multiplex detection of three uropathogenic clinical isolates with similar 16S rRNA sequences. The results demonstrate that electrokinetic stringency control can significantly improve the signal-to-noise ratio of the biosensor for multiplex urinary tract infection diagnosis. FROM THE CLINICAL EDITOR: Urinary tract infections remain a significant cause of mortality and morbidity as secondary conditions often related to chronic diseases or to immunosuppression. Rapid and sensitive identification of the causative organisms is critical in the appropriate management of this condition. These investigators demonstrate an in situ electrokinetic stringency control approach for a self-assembled monolayer-based electrochemical biosensor toward urinary tract infection diagnosis, establishing that such an approach significantly improves the biosensor's signal-to-noise ratio.

Indexed as

Biosensing TechniquesBiomarkersEnterococcus faecalisEscherichia coliHumansPhylogenyProteus mirabilisPseudomonas aeruginosaRNA, Ribosomal, 16SStaphylococcus saprophyticusUrinary Tract InfectionsUrine Specimen CollectionBiomarkersRNA, Ribosomal, 16SMatrix effectsMultiplex detectionSelf-assembled monolayersStringency controlUrinary tract infection

Identifiers

PMID23891989
PMCPMC3858494
OpenAlexW2142606687

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.