Evidence map›Paper›PMID 23891562›Full record

ArticleMolecular cell2013

A lipid E-MAP identifies Ubx2 as a critical regulator of lipid saturation and lipid bilayer stress.

Michal A Surma, Christian Klose, Debby Peng, Michael Shales, Caroline Mrejen, Adam Stefanko, Hannes Braberg, David E Gordon, Daniela Vorkel, Christer S Ejsing and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 146 citations in OpenAlex.

  1. Mitochondrial membrane remodeling in stress adaptation: Lipid control of organelle quality.Protein science : a publication of the Protein Society · 2026
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  7. StarD5 levels of expression correlate with onset and progression of steatosis and liver fibrosis.American journal of physiology. Gastrointestinal and liver physiology · 2024
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19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Michal A SurmaMax Planck Institute of Molecular Cell Biology and Genetics, 01307 Dresden, Germany.
Christian Klose
Debby Peng
Michael Shales
Caroline Mrejen
Adam Stefanko
Hannes Braberg
David E Gordon
Daniela Vorkel
Christer S Ejsing
Robert Farese
Kai Simons
Nevan J Krogan
Robert Ernst
QB3 · USMax Planck Institute of Molecular Cell Biology and Genetics · DEGladstone Institutes · USUniversity of Southern Denmark · DKUniversity of California, San Francisco · US

Funding

Research BaseP30DK063720 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KRUMMEL, MATTHEW F · 2003 to 2019
$21.8M
Rewiring Therapeutic Cells: User-Controlled T Cells and Stem CellsP50GM081879 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIM, WENDELL A · 2010 to 2017
$19.0M
Comparative Analysis of Genetic Interaction NetworksR01GM084279 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI IDEKER, TREY, KROGAN, NEVAN J · 2008 to 2017
$3.9M
Genetic Analysis of the Nucleosome and RNA Polymerase II: A Systems ApproachR01GM084448 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KROGAN, NEVAN J · 2008 to 2012
$2.3M
The Mechanisms of Lipid Droplet Formation and RegulationR01GM099844 · NIGMS · J. DAVID GLADSTONE INSTITUTES · PI FARESE, ROBERT V · 2012 to 2015
$1.9M
Integrating computation and genetics to quantify specificity in protein networksR01GM098101 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KORTEMME, TANJA, KROGAN, NEVAN J · 2011 to 2014
$1.7M
NIDDK NIH HHS P30 DK063720NIGMS NIH HHS GM081879NIGMS NIH HHS GM084279NIGMS NIH HHS GM084448NIGMS NIH HHS GM098101NIGMS NIH HHS GM099844NIGMS NIH HHS P50 GM081879NIGMS NIH HHS R01 GM084279NIGMS NIH HHS R01 GM084448NIGMS NIH HHS R01 GM098101NIGMS NIH HHS R01 GM099844
6 · The paper itself

Abstract

Biological membranes are complex, and the mechanisms underlying their homeostasis are incompletely understood. Here, we present a quantitative genetic interaction map (E-MAP) focused on various aspects of lipid biology, including lipid metabolism, sorting, and trafficking. This E-MAP contains ∼250,000 negative and positive genetic interaction scores and identifies a molecular crosstalk of protein quality control pathways with lipid bilayer homeostasis. Ubx2p, a component of the endoplasmic-reticulum-associated degradation pathway, surfaces as a key upstream regulator of the essential fatty acid (FA) desaturase Ole1p. Loss of Ubx2p affects the transcriptional control of OLE1, resulting in impaired FA desaturation and a severe shift toward more saturated membrane lipids. Both the induction of the unfolded protein response and aberrant nuclear membrane morphologies observed in cells lacking UBX2 are suppressed by the supplementation of unsaturated FAs. Our results point toward the existence of dedicated bilayer stress responses for membrane homeostasis.

Indexed as

Epistasis, GeneticBlotting, WesternCarrier ProteinsCell MembraneCells, CulturedComputational BiologyFatty Acid DesaturasesFlow CytometryHomeostasisImmunoprecipitationLipid BilayersLipid MetabolismMembrane LipidsOligonucleotide Array Sequence AnalysisPhosphatidylcholinesProtein Interaction MappingCarrier Proteinsdelta-9 fatty acid desaturaseFatty Acid DesaturasesLipid BilayersMembrane LipidsPhosphatidylcholinesSaccharomyces cerevisiae ProteinsStearoyl-CoA DesaturaseUBX2 protein, S cerevisiae

Identifiers

PMID23891562
PMCPMC3791312
OpenAlexW2087250756

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.