Evidence map›Paper›PMID 23891546›Full record

ReviewMethods (San Diego, Calif.)2014

Structure of allergens and structure based epitope predictions.

Fabio Dall'antonia, Tea Pavkov-Keller, Klaus Zangger, Walter Keller

Abstract readReview
In one paragraph

Review in Methods (San Diego, Calif.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

  1. Article
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  6. Review
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  11. Food Allergens of Plant Origin.Foods (Basel, Switzerland) · 2023
    Review
  12. Article
  13. Review
  14. Article
  15. Article
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  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Fabio Dall'antoniaEuropean Molecular Biology Laboratory, Hamburg Outstation, Hamburg, Germany.
Tea Pavkov-KellerACIB (Austrian Centre of Industrial Biotechnology), Petersgasse 14, 8010 Graz, Austria; Institute of Molecular Biosciences, University of Graz, Austria.
Klaus ZanggerInstitute of Chemistry, University of Graz, 8010 Graz, Austria.
Walter KellerInstitute of Molecular Biosciences, University of Graz, Austria. Electronic address: walter.keller@uni-graz.at.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The structure determination of major allergens is a prerequisite for analyzing surface exposed areas of the allergen and for mapping conformational epitopes. These may be determined by experimental methods including crystallographic and NMR-based approaches or predicted by computational methods. In this review we summarize the existing structural information on allergens and their classification in protein fold families. The currently available allergen-antibody complexes are described and the experimentally obtained epitopes compared. Furthermore we discuss established methods for linear and conformational epitope mapping, putting special emphasis on a recently developed approach, which uses the structural similarity of proteins in combination with the experimental cross-reactivity data for epitope prediction.

Indexed as

Models, MolecularAllergensAnimalsCrystallography, X-RayEpitope MappingEpitopesHumansHypersensitivityNuclear Magnetic Resonance, BiomolecularProtein Structure, SecondaryProtein Structure, TertiaryRecombinant Fusion ProteinsSoftwareAllergensEpitopesRecombinant Fusion ProteinsAllergen structureIgE epitopeNMRProtein familyStructure based epitope predictionX-ray

Identifiers

PMID23891546
PMCPMC3969231

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.