Evidence map›Paper›PMID 23891157›Full record

ArticleVirology2013

Barrier to autointegration factor (BAF) inhibits vaccinia virus intermediate transcription in the absence of the viral B1 kinase.

Nouhou Ibrahim, April Wicklund, Augusta Jamin, Matthew S Wiebe

Abstract read
In one paragraph

Article in Virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 36 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Nouhou IbrahimNebraska Center for Virology, University of Nebraska, Lincoln, NE 68583-0900, USA.
April Wicklund
Augusta Jamin
Matthew S Wiebe
University of Nebraska–Lincoln · US

Funding

VIRAL SHUTOFF OF HOST TRANSCRIPTION--PBCV-1 INFECTEDP20RR015635 · NCRR · UNIVERSITY OF NEBRASKA LINCOLN · PI GORANTLA, SANTHI · 2000 to 2009
$22.1M
Nebraska Center for VirologyP30GM103509 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI WOOD, CHARLES · 2012 to 2014
$3.3M
Research Training in Comparative Viral PathogenesisT32AI060547 · NIAID · UNIVERSITY OF NEBRASKA LINCOLN · PI WOOD, CHARLES · 2004 to 2013
$2.5M
Intracellular Defenses Against Foreign DNA: Insights From Poxvirus-Infected CellsR56AI099062 · NIAID · UNIVERSITY OF NEBRASKA LINCOLN · PI WIEBE, MATTHEW S · 2013 to 2013
$340k
BAF: an Intrinsic Host Defense Responsive to Foreign DNAK22AI080941 · NIAID · UNIVERSITY OF NEBRASKA LINCOLN · PI WIEBE, MATTHEW S · 2010 to 2011
$270k
NCRR NIH HHS 1P20 RR15635NCRR NIH HHS P20 RR015635NIAID NIH HHS 1K22AI080941NIAID NIH HHS 1R56AI099062NIAID NIH HHS K22 AI080941NIAID NIH HHS R56 AI099062NIAID NIH HHS T32 AI060547NIGMS NIH HHS P30 GM103509PHS HHS 1T32AIO60547
6 · The paper itself

Abstract

Barrier to autointegration factor (BAF/BANF1) is a cellular DNA-binding protein found in the nucleus and cytoplasm. Cytoplasmic BAF binds to foreign DNA and can act as a defense against vaccinia DNA replication. To evade BAF, vaccinia expresses the B1 kinase, which phosphorylates BAF and blocks its ability to bind DNA. Interestingly, B1 is also needed for viral intermediate gene expression via an unknown mechanism. Therefore, we evaluated the impact of B1-BAF signaling on vaccinia transcription. Strikingly, the decrease in vaccinia transcription caused by loss of B1 can be rescued by depletion of BAF. The repressive action of BAF is greatest on a viral promoter, and is more modest when non-vaccinia promoters are employed, which suggests BAF acts in a gene specific manner. These studies expand our understanding of the role of the B1 kinase during infection and provide the first evidence that BAF is a defense against viral gene expression.

Indexed as

Host-Pathogen InteractionsImmune EvasionTranscription, GeneticVirus ReplicationAnimalsCell LineDNA-Binding ProteinsHumansNuclear ProteinsVaccinia virusViral ProteinsBANF1 protein, humanDNA-Binding ProteinsNuclear ProteinsVB1R protein, Vaccinia virusViral ProteinsBAFBANF1Barrier to autointegrationTranscriptionVacciniaVirus host interaction

Identifiers

PMID23891157
PMCPMC3755115
OpenAlexW2171987595

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.