Evidence map›Paper›PMID 23890008›Full record

ArticleChemistry & biology2013

A chemical biology approach to interrogate quorum-sensing regulated behaviors at the molecular and cellular level.

Colin A Lowery, Susana Matamouros, Sherry Niessen, Jie Zhu, Jonathan Scolnick, Jenny M Lively, Benjamin F Cravatt, Samuel I Miller, Gunnar F Kaufmann, Kim D Janda

Open access · greenAbstract read
In one paragraph

Article in Chemistry & biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Metabolomic Analysis of the Effect ofAntibiotics (Basel, Switzerland) · 2023
    Article
  2. Glycation Reactivity of a Quorum-Sensing Signaling Molecule.Angewandte Chemie (International ed. in English) · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Colin A LoweryThe Skaggs Institute for Chemical Biology, Departments of Chemistry, Immunology and Microbial Science, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.
Susana Matamouros
Sherry Niessen
Jie Zhu
Jonathan Scolnick
Jenny M Lively
Benjamin F Cravatt
Samuel I Miller
Gunnar F Kaufmann
Kim D Janda
Scripps Research Institute · USUniversity of Washington · US

Funding

Variation in Human Innate ImmunityU54AI057141 · NIAID · UNIVERSITY OF WASHINGTON · PI HAYDEN, HILLARY · 2003 to 2013
$102.3M
Chemical Approaches for Activity-Based ProteomicsR37CA087660 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI CRAVATT, BENJAMIN F · 2009 to 2018
$3.1M
Chemical Strategies to Manipulate A1-2 Signaling in Bacterial PathogensR01AI077644 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI JANDA, KIM · 2010 to 2014
$2.3M
NCI NIH HHS R37 CA087660NIAID NIH HHS AI057141NIAID NIH HHS AI077644NIAID NIH HHS R01 AI077644NIAID NIH HHS U54 AI057141
6 · The paper itself

Abstract

Small molecule probes have been used extensively to explore biologic systems and elucidate cellular signaling pathways. In this study, we use an inhibitor of bacterial communication to monitor changes in the proteome of Salmonella enterica serovar Typhimurium with the aim of discovering unrecognized processes regulated by AI-2-based quorum-sensing (QS), a mechanism of bacterial intercellular communication that allows for the coordination of gene expression in a cell density-dependent manner. In S. typhimurium, this system regulates the uptake and catabolism of intercellular signals and has been implicated in pathogenesis, including the invasion of host epithelial cells. We demonstrate that our QS antagonist is capable of selectively inhibiting the expression of known QS-regulated proteins in S. typhimurium, thus attesting that QS inhibitors may be used to confirm proposed and elucidate previously unidentified QS pathways without relying on genetic manipulation.

Indexed as

Molecular Probe TechniquesQuorum SensingBacterial ProteinsHomoserineLactonesPentanonesProteomicsRNA, MessengerSalmonella typhimurium4,5-dihydroxypentane-2,3-dioneBacterial ProteinsHomoserineLactonesN-octanoylhomoserine lactonePentanonesRNA, Messenger

Identifiers

PMID23890008
PMCPMC3736722
OpenAlexW2089635819

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.