Evidence map›Paper›PMID 23888127›Full record

ArticleMetabolomics : Official journal of the Metabolomic Society2013

An analysis of a 'community-driven' reconstruction of the human metabolic network.

Neil Swainston, Pedro Mendes, Douglas B Kell

Open access · hybridAbstract read
In one paragraph

Article in Metabolomics : Official journal of the Metabolomic Society, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 42 citations in OpenAlex.

  1. Frontiers in systems biology · 2024
    Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. libChEBI: an API for accessing the ChEBI database.Journal of cheminformatics · 2016
    Article
  10. Event-based text mining for biology and functional genomics.Briefings in functional genomics · 2015
    Review
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Recon 2.2: from reconstruction to model of human metabolism.Metabolomics : Official journal of the Metabolomic Society
    Article
  17. A 'rule of 0.5' for the metabolite-likeness of approved pharmaceutical drugs.Metabolomics : Official journal of the Metabolomic Society
    Article
  18. Molecular phenotyping of a UK population: defining the human serum metabolome.Metabolomics : Official journal of the Metabolomic Society
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Neil SwainstonSchool of Chemistry, The University of Manchester, Oxford Road, Manchester, M13 9PL UK ; Manchester Institute of Biotechnology, The University of Manchester, Princess Street, Manchester, M1 7DN UK.
Pedro Mendes
Douglas B Kell
University of Manchester · GB

Funding

COPASI software for modeling and simulation of biochemical networksR01GM080219 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI HOOPS, STEFAN, MENDES, PEDRO · 2007 to 2019
$5.4M
Biotechnology and Biological Sciences Research Council BB/J019259/1Biotechnology and Biological Sciences Research Council BB/K019783/1NIGMS NIH HHS R01 GM080219
6 · The paper itself

Abstract

Following a strategy similar to that used in baker's yeast (Herrgård et al. Nat Biotechnol 26:1155-1160, 2008). A consensus yeast metabolic network obtained from a community approach to systems biology (Herrgård et al. 2008; Dobson et al. BMC Syst Biol 4:145, 2010). Further developments towards a genome-scale metabolic model of yeast (Dobson et al. 2010; Heavner et al. BMC Syst Biol 6:55, 2012). Yeast 5-an expanded reconstruction of the

Indexed as

Metabolic networksMetabolismModellingNetworksSystems biology

Identifiers

PMID23888127
PMCPMC3715687
OpenAlexW2070957829

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.