ArticleDatabase : the journal of biological databases and curation2013
BmTEdb: a collective database of transposable elements in the silkworm genome.
Article in Database : the journal of biological databases and curation, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed, 38 citations in OpenAlex.
- The complete sequence of the silkworm W chromosome uncovers its rapid evolution by large-scale duplications/deletions and translocation of W-linked genes.G3 (Bethesda, Md.) · 2026Article
- Rapid Targeted Assembly of the Proteome Reveals Evolutionary Variation of GC Content in Avian Lice.Bioinformatics and biology insights · 2024Article
- Evolution ofInsects · 2023Article
- Review
- Global Profiling of Genes Expressed in the Silk Glands of Philippine-Reared Mulberry SilkwormsInsects · 2022Article
- Article
- Finding and Characterizing Repeats in Plant Genomes.Methods in molecular biology (Clifton, N.J.) · 2022Article
- The Landscapes of Full-Length Transcripts and Splice Isoforms as Well as Transposons Exonization in the Lepidopteran Model System,Frontiers in genetics · 2021Article
- CicerSpTEdb: A web-based database for high-resolution genome-wide identification of transposable elements in Cicer species.PloS one · 2021Article
- SilkDB 3.0: visualizing and exploring multiple levels of data for silkworm.Nucleic acids research · 2020Article
- Diversification of Transposable Elements in Arthropods and Its Impact on Genome Evolution.Genes · 2019Article
- Computational tools to unmask transposable elements.Nature reviews. Genetics · 2018Review
- Evolutionary dynamics of transposable elements during silkworm domestication.Genes & genomics · 2018Article
- Identification of transposons near predicted lncRNA and mRNA pools of Prunus mume using an integrative transposable element database constructed from Rosaceae plant genomes.Molecular genetics and genomics : MGG · 2018Article
- Segmental duplications: evolution and impact among the current Lepidoptera genomes.BMC evolutionary biology · 2017Article
- Transposable Element Bm1645 is a Source of BmAGO2-associated Small RNAs that affect its expression in Bombyx mori.BMC genomics · 2017Article
- Horizontal transfer of a novel Helentron in insects.Molecular genetics and genomics : MGG · 2017Article
- InsectBase: a resource for insect genomes and transcriptomes.Nucleic acids research · 2016Article
- A comprehensive view of the web-resources related to sericulture.Database : the journal of biological databases and curation · 2016Review
- DPTEdb, an integrative database of transposable elements in dioecious plants.Database : the journal of biological databases and curation · 2016Article
Corrections and comments
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Authors and funding
6 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The silkworm, Bombyx mori, is one of the major insect model organisms, and its draft and fine genome sequences became available in 2004 and 2008, respectively. Transposable elements (TEs) constitute ~40% of the silkworm genome. To better understand the roles of TEs in organization, structure and evolution of the silkworm genome, we used a combination of de novo, structure-based and homology-based approaches for identification of the silkworm TEs and identified 1308 silkworm TE families. These TE families and their classification information were organized into a comprehensive and easy-to-use web-based database, BmTEdb. Users are entitled to browse, search and download the sequences in the database. Sequence analyses such as BLAST, HMMER and EMBOSS GetORF were also provided in BmTEdb. This database will facilitate studies for the silkworm genomics, the TE functions in the silkworm and the comparative analysis of the insect TEs. Database URL: http://gene.cqu.edu.cn/BmTEdb/.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.