Evidence map›Paper›PMID 23885080›Full record

ArticleJournal of virology2013

Antiviral RNA silencing initiated in the absence of RDE-4, a double-stranded RNA binding protein, in Caenorhabditis elegans.

Xunyang Guo, Rui Zhang, Jeffrey Wang, Rui Lu

Abstract read
In one paragraph

Article in Journal of virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Small RNAs and chromatin in the multigenerational epigenetic landscape ofPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
  8. Article
  9. Article
  10. Review
  11. mBio · 2017
    Article
  12. Article
  13. Article
  14. The evolving world of small RNAs from RNA viruses.Wiley interdisciplinary reviews. RNA · 2016
    Review
  15. Article
  16. Review
  17. Dicer's role as an antiviral: still an enigma.Current opinion in immunology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Xunyang GuoDepartment of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, USA.
Rui Zhang
Jeffrey Wang
Rui Lu

Funding

The functional role of DRH-1 in RNAi directed viral immunityR03AI092159 · NIAID · LOUISIANA STATE UNIV A&M COL BATON ROUGE · PI LU, RUI · 2012 to 2013
$148k
NIAID NIH HHS 1R03AI092159-01A1NIAID NIH HHS R03 AI092159
6 · The paper itself

Abstract

Small interfering RNAs (siRNAs) processed from double-stranded RNA (dsRNA) of virus origins mediate potent antiviral defense through a process referred to as RNA interference (RNAi) or RNA silencing in diverse organisms. In the simple invertebrate Caenorhabditis elegans, the RNAi process is initiated by a single Dicer, which partners with the dsRNA binding protein RDE-4 to process dsRNA into viral siRNAs (viRNAs). Notably, in C. elegans this RNA-directed viral immunity (RDVI) also requires a number of worm-specific genes for its full antiviral potential. One such gene is rsd-2 (RNAi spreading defective 2), which was implicated in RDVI in our previous studies. In the current study, we first established an antiviral role by showing that rsd-2 null mutants permitted higher levels of viral RNA accumulation, and that this enhanced viral susceptibility was reversed by ectopic expression of RSD-2. We then examined the relationship of rsd-2 with other known components of RNAi pathways and established that rsd-2 functions in a novel pathway that is independent of rde-4 but likely requires the RNA-dependent RNA polymerase RRF-1, suggesting a critical role for RSD-2 in secondary viRNA biogenesis, likely through coordinated action with RRF-1. Together, these results suggest that RDVI in the single-Dicer organism C. elegans depends on the collective actions of both RDE-4-dependent and RDE-4-independent mechanisms to produce RNAi-inducing viRNAs. Our study reveals, for the first time, a novel siRNA-producing mechanism in C. elegans that bypasses the need for a dsRNA-binding protein.

Indexed as

Host-Pathogen InteractionsRNA InterferenceAnimalsAnimals, Genetically ModifiedAntiviral AgentsBlotting, NorthernCaenorhabditis elegansCaenorhabditis elegans ProteinsInsect VirusesRNA-Binding ProteinsRNA-Dependent RNA PolymeraseRNA, Double-StrandedRNA, Small InterferingRNA, ViralAntiviral AgentsCaenorhabditis elegans Proteinsrde-1 protein, C elegansRDE-4 protein, C elegansRNA-Binding ProteinsRNA-Dependent RNA PolymeraseRNA, Double-StrandedRNA, Small InterferingRNA, ViralRRF-1 protein, C elegansRSD-2 protein, C elegans

Identifiers

PMID23885080
PMCPMC3807410

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.