Evidence map›Paper›PMID 23884606›Full record

ArticleGenes & development2013

Impaired replication elongation in Tetrahymena mutants deficient in histone H3 Lys 27 monomethylation.

Shan Gao, Jie Xiong, Chunchao Zhang, Brian R Berquist, Rendong Yang, Meng Zhao, Anthony J Molascon, Shaina Y Kwiatkowski, Dongxia Yuan, Zhaohui Qin and 5 more

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 86 citations in OpenAlex.

  1. Specific tracking of N-terminal clipping on histone H3 inMarine life science & technology · 2026
    Article
  2. A distinct subclade of AlkB family demethylases in ciliates safeguards the positional fidelity of eukaryotic NProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Dynamic DNAGenome research · 2024
    Article
  10. Review
  11. Article
  12. Article
  13. Transcriptome analysis of the binucleate ciliateMolecular biology of the cell · 2023
    Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Shan GaoDepartment of Pathology, University of Michigan, Ann Arbor, Michigan 48109, USA.
Jie Xiong
Chunchao Zhang
Brian R Berquist
Rendong Yang
Meng Zhao
Anthony J Molascon
Shaina Y Kwiatkowski
Dongxia Yuan
Zhaohui Qin
Jianfan Wen
Geoffrey M Kapler
Philip C Andrews
Wei Miao
Yifan Liu
University of Michigan–Ann Arbor · USEmory University · USInstitute of Hydrobiology · CNTexas A&M Health Science Center · USChinese Academy of Sciences · CNKunming Institute of Zoology · CN

Funding

UNDERSTANDING THE PATHOGENESIS OF CAMPYLOBACTER JEJUNIP41RR018627 · NCRR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FINLEY, RUSSELL L · 2003 to 2007
$12.4M
Replication and Amplification of Tetrahymena rDNAR01GM053572 · NIGMS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI KAPLER, GEOFFREY M. · 2002 to 2010
$2.1M
Polycomb-mediated heterochromatin formation in TetrahymenaR01GM087343 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LIU, YIFAN · 2010 to 2014
$1.4M
Model-Based Methods for Analyzing ChIP Sequencing DataR01HG005119 · NHGRI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI QIN, ZHAOHUI · 2009 to 2012
$1.2M
NCRR NIH HHS 1P41RR018627NCRR NIH HHS P41 RR018627NHGRI NIH HHS R01 HG005119NHGRI NIH HHS R01-HG005119NIGMS NIH HHS R01 GM053572NIGMS NIH HHS R01 GM087343NIGMS NIH HHS R01-GM087343NIGMS NIH HHS R01-GM53572
6 · The paper itself

Abstract

Replication of nuclear DNA occurs in the context of chromatin and is influenced by histone modifications. In the ciliate Tetrahymena thermophila, we identified TXR1, encoding a histone methyltransferase. TXR1 deletion resulted in severe DNA replication stress, manifested by the accumulation of ssDNA, production of aberrant replication intermediates, and activation of robust DNA damage responses. Paired-end Illumina sequencing of ssDNA revealed intergenic regions, including replication origins, as hot spots for replication stress in ΔTXR1 cells. ΔTXR1 cells showed a deficiency in histone H3 Lys 27 monomethylation (H3K27me1), while ΔEZL2 cells, deleting a Drosophila E(z) homolog, were deficient in H3K27 di- and trimethylation, with no detectable replication stress. A point mutation in histone H3 at Lys 27 (H3 K27Q) mirrored the phenotype of ΔTXR1, corroborating H3K27me1 as a key player in DNA replication. Additionally, we demonstrated interactions between TXR1 and proliferating cell nuclear antigen (PCNA). These findings support a conserved pathway through which H3K27me1 facilitates replication elongation.

Indexed as

DNA ReplicationDNA, Single-StrandedHistonesMethylationMutationProliferating Cell Nuclear AntigenRepressor ProteinsTetrahymena thermophilaDNA, Single-StrandedHistonesProliferating Cell Nuclear AntigenRepressor ProteinsH3 Lys 27 methylationhistone methyltransferasereplication elongationreplication originreplication stressssDNA

Identifiers

PMID23884606
PMCPMC3744725
OpenAlexW2129768923

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.