Evidence map›Paper›PMID 23884459›Full record

ArticleThe Journal of biological chemistry2013

Mitochondrial DNA ligase is dispensable for the viability of cultured cells but essential for mtDNA maintenance.

Inna N Shokolenko, Rafik Z Fayzulin, Sachin Katyal, Peter J McKinnon, Glenn L Wilson, Mikhail F Alexeyev

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 35 citations in OpenAlex.

  1. Novel Biallelic LIG3 Mutations Causing Lethal Phenotype With Immunodeficiency.American journal of medical genetics. Part A · 2026
    Article
  2. Article
  3. Decoding mitochondrial DNA damage and repair associated withFrontiers in cellular and infection microbiology · 2024
    Review
  4. Article
  5. Article
  6. Article
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  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Elimination of Mitochondrial DNA from Mammalian Cells.Current protocols in cell biology · 2018
    Article
  16. DNA repair after oxidative stress: current challenges.Current opinion in toxicology · 2018
    Article
  17. Article
  18. Article
  19. Mitochondrial DNA damage induced autophagy, cell death, and disease.Frontiers in bioscience (Landmark edition) · 2016
    Review
  20. The "fast" and the "slow" modes of mitochondrial DNA degradation.Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Inna N ShokolenkoFrom the Departments of Cell Biology and Neuroscience and.
Rafik Z Fayzulin
Sachin Katyal
Peter J McKinnon
Glenn L Wilson
Mikhail F Alexeyev
St. Jude Children's Research Hospital · USUniversity of South Alabama · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
T-type Calcium Channels and von Willebrand Factor ReleaseP01HL066299 · NHLBI · UNIVERSITY OF SOUTH ALABAMA · PI ALVAREZ, DIEGO F. · 2001 to 2022
$34.6M
ATM and DNA Damage in the Nervous SystemR01NS037956 · NINDS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI MCKINNON, PETER J · 1998 to 2022
$7.6M
ENVIRONMENTAL BETA CELL TOXINS--MECHANISMS OF ACTIONR01ES003456 · NIEHS · UNIVERSITY OF SOUTH ALABAMA · PI WILSON, GLENN · 1985 to 2012
$3.3M
Mouse models for mitochondrial disorders caused by mutations in mtDNAR01OD010944 · OD · UNIVERSITY OF SOUTH ALABAMA · PI ALEXEYEV, MIKHAIL F., WALLACE, DOUGLAS C · 2012 to 2020
$2.6M
Mouse models for mitochondrial disorders caused by mtDNA mutationsR01RR031286 · NCRR · UNIVERSITY OF SOUTH ALABAMA · PI ALEXEYEV, MIKHAIL F. · 2010 to 2011
$721k
ATM and DNA Damage in the Nervous SystemR56NS037956 · NINDS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI MCKINNON, PETER J · 2007 to 2007
$413k
Request for a Spectral Confocal MicroscopeS10RR027535 · NCRR · UNIVERSITY OF SOUTH ALABAMA · PI RICH, THOMAS C · 2010 to 2010
$397k
NCI NIH HHS CA21765NCI NIH HHS P30 CA021765NCI NIH HHS P30 CA21765NCRR NIH HHS R01 RR031286NCRR NIH HHS S10 RR027535NCRR NIH HHS S10RR027535NHLBI NIH HHS P01 HL066299NHLBI NIH HHS P01 HL66299NIEHS NIH HHS ES03456NIEHS NIH HHS R01 ES003456NIH HHS OD010944NIH HHS R01 OD010944NINDS NIH HHS NS37956NINDS NIH HHS R01 NS037956NINDS NIH HHS R56 NS037956
6 · The paper itself

Abstract

Multiple lines of evidence support the notion that DNA ligase III (LIG3), the only DNA ligase found in mitochondria, is essential for viability in both whole organisms and in cultured cells. Previous attempts to generate cells devoid of mitochondrial DNA ligase failed. Here, we report, for the first time, the derivation of viable LIG3-deficient mouse embryonic fibroblasts. These cells lack mtDNA and are auxotrophic for uridine and pyruvate, which may explain the apparent lethality of the Lig3 knock-out observed in cultured cells in previous studies. Cells with severely reduced expression of LIG3 maintain normal mtDNA copy number and respiration but show reduced viability in the face of alkylating and oxidative damage, increased mtDNA degradation in response to oxidative damage, and slow recovery from mtDNA depletion. Our findings clarify the cellular role of LIG3 and establish that the loss of viability in LIG3-deficient cells is conditional and secondary to the ρ(0) phenotype.

Indexed as

AllelesAnimalsCrosses, GeneticDNA DamageDNA Ligase ATPDNA LigasesDNA, MitochondrialDNA RepairFibroblastsGenotypeHeLa CellsHumansMiceMicroscopy, ConfocalMitochondriaMitochondrial ProteinsDNA Ligase ATPDNA ligase III alpha protein, XenopusDNA LigasesDNA, MitochondrialLIG3 protein, humanLig3 protein, mouseMitochondrial ProteinsOligonucleotidesPoly-ADP-Ribose Binding ProteinsXenopus ProteinsDNA DamageDNA RepairDNA ReplicationMitochondriaMitochondrial DNAMitochondrial DNA DegradationReactive Oxygen SpeciesRespirationrho-0 Cells

Identifiers

PMID23884459
PMCPMC3772206
OpenAlexW2162230349

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.