Evidence map›Paper›PMID 23883930›Full record

ArticleNature2013

The oil palm SHELL gene controls oil yield and encodes a homologue of SEEDSTICK.

Rajinder Singh, Eng-Ti Leslie Low, Leslie Cheng-Li Ooi, Meilina Ong-Abdullah, Ngoot-Chin Ting, Jayanthi Nagappan, Rajanaidu Nookiah, Mohd Din Amiruddin, Rozana Rosli, Mohamad Arif Abdul Manaf and 13 more

Abstract read
In one paragraph

Article in Nature, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
15.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 218 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Why participatory plant research now?Quantitative plant biology · 2025
    Article
  9. Article
  10. Article
  11. Highly EfficientPlants (Basel, Switzerland) · 2024
    Article
  12. Article
  13. Review
  14. Genome-Wide Analysis of MADS-Box Gene Family RevealsInternational journal of molecular sciences · 2024
    Article
  15. Article
  16. Article
  17. High-resolution genetic linkage map and height-related QTLs in an oil palm (Physiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Article
  18. Article
  19. Article
  20. Seedlessness Trait and Genome Editing-A Review.International journal of molecular sciences · 2023
    Review

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 3 institutions in 2 countries.

Rajinder SinghMalaysian Palm Oil Board, 6, Persiaran Institusi, Bandar Baru Bangi, 43000 Kajang, Selangor, Malaysia. raviga@mpob.gov.my
Eng-Ti Leslie Low
Leslie Cheng-Li Ooi
Meilina Ong-Abdullah
Ngoot-Chin Ting
Jayanthi Nagappan
Rajanaidu Nookiah
Mohd Din Amiruddin
Rozana Rosli
Mohamad Arif Abdul Manaf
Kuang-Lim Chan
Mohd Amin Halim
Norazah Azizi
Nathan Lakey
Steven W Smith
Muhammad A Budiman
Michael Hogan
Blaire Bacher
Andrew Van Brunt
Chunyan Wang
Jared M Ordway
Ravigadevi Sambanthamurthi
Robert A Martienssen
Malaysian Palm Oil Board · MYOrion Genomics (United States) · USGordon and Betty Moore Foundation · US

Funding

Transposons, RNA Interference and HeterochromatinR01GM067014 · NIGMS · COLD SPRING HARBOR LABORATORY · PI MARTIENSSEN, ROBERT A · 2003 to 2016
$4.1M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM067014
6 · The paper itself

Abstract

A key event in the domestication and breeding of the oil palm Elaeis guineensis was loss of the thick coconut-like shell surrounding the kernel. Modern E. guineensis has three fruit forms, dura (thick-shelled), pisifera (shell-less) and tenera (thin-shelled), a hybrid between dura and pisifera. The pisifera palm is usually female-sterile. The tenera palm yields far more oil than dura, and is the basis for commercial palm oil production in all of southeast Asia. Here we describe the mapping and identification of the SHELL gene responsible for the different fruit forms. Using homozygosity mapping by sequencing, we found two independent mutations in the DNA-binding domain of a homologue of the MADS-box gene SEEDSTICK (STK, also known as AGAMOUS-LIKE 11), which controls ovule identity and seed development in Arabidopsis. The SHELL gene is responsible for the tenera phenotype in both cultivated and wild palms from sub-Saharan Africa, and our findings provide a genetic explanation for the single gene hybrid vigour (or heterosis) attributed to SHELL, via heterodimerization. This gene mutation explains the single most important economic trait in oil palm, and has implications for the competing interests of global edible oil production, biofuels and rainforest conservation.

Indexed as

Plant OilsAmino Acid SequenceArabidopsis ProteinsArecaceaeChromosome MappingGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantGenetic VariationHomozygoteMADS Domain ProteinsMolecular Sequence DataMutationPalm OilSequence AlignmentArabidopsis ProteinsMADS Domain ProteinsPalm OilPlant OilsSEEDSTICK protein, Arabidopsis

Identifiers

PMID23883930
PMCPMC4209285
OpenAlexW1979576354

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.