Evidence map›Paper›PMID 23882083›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Activation-induced cytidine deaminase (AID) is necessary for the epithelial-mesenchymal transition in mammary epithelial cells.

Denise P Muñoz, Elbert L Lee, Sachiko Takayama, Jean-Philippe Coppé, Seok-Jin Heo, Dario Boffelli, Javier M Di Noia, David I K Martin

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed, 1 pooled it
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 1 synthesis or guideline pooled it, 80 citations in OpenAlex.

  1. Pooled it
  2. Super-enhancer profiling reveals ThPOK/ZBTB7B, a CD4Cellular and molecular life sciences : CMLS · 2025
    Article
  3. Article
  4. Review
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  9. Review
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  12. Article
  13. Article
  14. CancerFrontiers in immunology · 2021
    Article
  15. Activation-induced cytidine deaminase: in sickness and in health.Journal of cancer research and clinical oncology · 2020
    Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Denise P MuñozChildren's Hospital Oakland Research Institute, Oakland, CA 94609, USA. dmunoz@chori.org
Elbert L Lee
Sachiko Takayama
Jean-Philippe Coppé
Seok-Jin Heo
Dario Boffelli
Javier M Di Noia
David I K Martin
UCSF Helen Diller Family Comprehensive Cancer Center · USUniversité de Montréal · CA

Funding

Epigenetic Suppression of the Obese Yellow PhenotypeR01CA115768 · NCI · CHILDREN'S HOSPITAL &RES CTR AT OAKLAND · PI MARTIN, DAVID IAN KINGSTON · 2005 to 2009
$1.5M
Epigenetic role of AID in the epithelial-mesenchymal transition in breast cancerK22CA163969 · NCI · CHILDREN'S HOSPITAL & RES CTR AT OAKLAND · PI MUNOZ, DENISE PAULA · 2011 to 2013
$482k
A high-throughput screen for candidate agents that may reverse gamma-globin silenR21DK080428 · NIDDK · CHILDREN'S HOSPITAL & RES CTR AT OAKLAND · PI MARTIN, DAVID IAN KINGSTON · 2009 to 2010
$440k
An Assay to Identify and Classify EpimutagensR21ES016581 · NIEHS · CHILDREN'S HOSPITAL & RES CTR AT OAKLAND · PI MARTIN, DAVID IAN KINGSTON · 2008 to 2009
$440k
NCI NIH HHS 5K22CA163969-02NCI NIH HHS CA115768-05NCI NIH HHS K22 CA163969NCI NIH HHS R01 CA115768NIDDK NIH HHS DK080428-02NIDDK NIH HHS R21 DK080428NIEHS NIH HHS 1R21ES016581-02NIEHS NIH HHS R21 ES016581
6 · The paper itself

Abstract

Activation-induced cytidine deaminase (AID), which functions in antibody diversification, is also expressed in a variety of germ and somatic cells. Evidence that AID promotes DNA demethylation in epigenetic reprogramming phenomena, and that it is induced by inflammatory signals, led us to investigate its role in the epithelial-mesenchymal transition (EMT), a critical process in normal morphogenesis and tumor metastasis. We find that expression of AID is induced by inflammatory signals that induce the EMT in nontransformed mammary epithelial cells and in ZR75.1 breast cancer cells. shRNA-mediated knockdown of AID blocks induction of the EMT and prevents cells from acquiring invasive properties. Knockdown of AID suppresses expression of several key EMT transcriptional regulators and is associated with increased methylation of CpG islands proximal to the promoters of these genes; furthermore, the DNA demethylating agent 5 aza-2'deoxycytidine (5-Aza-dC) antagonizes the effects of AID knockdown on the expression of EMT factors. We conclude that AID is necessary for the EMT in this breast cancer cell model and in nontransformed mammary epithelial cells. Our results suggest that AID may act near the apex of a hierarchy of regulatory steps that drive the EMT, and are consistent with this effect being mediated by cytosine demethylation. This evidence links our findings to other reports of a role for AID in epigenetic reprogramming and control of gene expression.

Indexed as

Gene Expression RegulationAICDA (Activation-Induced Cytidine Deaminase)AnimalsAzacitidineBlotting, WesternBreast NeoplasmsCell LineCell Line, TumorCell MovementCpG IslandsCytidine DeaminaseDecitabineDNA MethylationEpithelial CellsEpithelial-Mesenchymal TransitionGenetic Complementation TestAICDA (Activation-Induced Cytidine Deaminase)AzacitidineCytidine DeaminaseDecitabineMatrix MetalloproteinasesTransforming Growth Factor betaTumor Necrosis Factor-alpha

Identifiers

PMID23882083
PMCPMC3740878
OpenAlexW1990606447

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.