Evidence map›Paper›PMID 23880768›Full record

ArticleThe Journal of biological chemistry2013

GTP is the primary activator of the anti-HIV restriction factor SAMHD1.

Sarah M Amie, Robert A Bambara, Baek Kim

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 83 citations in OpenAlex.

  1. Targeting IMPDH to inhibit SAMHD1 inCell cycle (Georgetown, Tex.) · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Sarah M AmieFrom the Department of Microbiology and Immunology, University of Rochester Medical Center, Rochester, New York 14642 and.
Robert A BambaraFrom the Department of Microbiology and Immunology, University of Rochester Medical Center, Rochester, New York 14642 and.
Baek Kimthe Center for Drug Discovery, Department of Pediatrics, Emory University, Atlanta, Georgia 30322. Electronic address: baek.kim@emory.edu.
University of Rochester Medical Center · USEmory University · US

Funding

Replication fidelity and lentiviral pathogenesisR01AI049781 · NIAID · UNIVERSITY OF ROCHESTER · PI KIM, BAEK · 2002 to 2016
$4.9M
Training in Cellular, Biochemical and Molecular SciencesT32GM068411 · NIGMS · UNIVERSITY OF ROCHESTER · PI MAQUAT, LYNNE E · 2005 to 2019
$3.9M
Training in HIV Replication and PathogenesisT32AI049815 · NIAID · UNIVERSITY OF ROCHESTER · PI WEDEKIND, JOSEPH E · 2001 to 2020
$3.5M
SAMHD1 controls dNTP pool and HIV sensitivity to NRTIsR01GM104198 · NIGMS · UNIVERSITY OF ROCHESTER · PI KIM, BAEK · 2012 to 2018
$2.3M
Targeting PI3K/Akt Cell Survival Pathway as a Novel Anti-HIV TherapyR01AI077401 · NIAID · UNIVERSITY OF ROCHESTER · PI KIM, BAEK · 2009 to 2012
$1.4M
Replicational Fidelity and Lentivial PathogenesisR56AI049781 · NIAID · EMORY UNIVERSITY · PI KIM, BAEK · 2017 to 2017
$390k
NIAID NIH HHS AI049781NIAID NIH HHS AI049815NIAID NIH HHS AI077401NIAID NIH HHS R01 AI049781NIAID NIH HHS R01 AI077401NIAID NIH HHS T32 AI049815NIGMS NIH HHS GM068411NIGMS NIH HHS R01 GM104198NIGMS NIH HHS T32 GM068411
6 · The paper itself

Abstract

SAMHD1 (SAM domain- and HD domain-containing protein 1) is a dGTP-dependent dNTP triphosphohydrolase that converts dNTPs into deoxyribonucleosides and triphosphates. Therefore, SAMHD1 expression, particularly in non-dividing cells, can restrict retroviral infections such as HIV and simian immunodeficiency virus by limiting cellular dNTPs, which are essential for reverse transcription. It has previously been established that dGTP acts as both an activator and a substrate of this enzyme, suggesting that phosphohydrolase activity of SAMHD1 is regulated by dGTP availability in the cell. However, we now demonstrate biochemically that the NTP GTP is equally capable of activating SAMHD1, but GTP is not hydrolyzed by the enzyme. Activation of SAMHD1 phosphohydrolase activity was tested under physiological concentrations of dGTP or GTP found in either dividing or non-dividing cells. Because GTP is 1000-fold more abundant than dGTP in cells, GTP was able to activate the enzyme to a greater extent than dGTP, suggesting that GTP is the primary activator of SAMHD1. Finally, we show that SAMHD1 has the ability to hydrolyze base-modified nucleotides, indicating that the active site of SAMHD1 is not restrictive to such modifications, and is capable of regulating the levels of non-canonical dNTPs such as dUTP. This study provides further insights into the regulation of SAMHD1 with regard to allosteric activation and active site specificity.

Indexed as

Deoxyguanine NucleotidesEnzyme ActivationGuanosine TriphosphateHIVHumansMonomeric GTP-Binding ProteinsSAM Domain and HD Domain-Containing Protein 1Deoxyguanine Nucleotidesdeoxyguanosine triphosphateGuanosine TriphosphateMonomeric GTP-Binding ProteinsSAM Domain and HD Domain-Containing Protein 1SAMHD1 protein, humanAllosteric RegulationdNTPHIVHydrolasesMacrophagesReverse TranscriptionSAMHD1

Identifiers

PMID23880768
PMCPMC3757166
OpenAlexW1988622942

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.