Evidence map›Paper›PMID 23880766›Full record

ArticleThe Journal of biological chemistry2013

Basal autophagy is required for the efficient catabolism of sialyloligosaccharides.

Junichi Seino, Li Wang, Yoichiro Harada, Chengcheng Huang, Kumiko Ishii, Noboru Mizushima, Tadashi Suzuki

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. The Many Ways by WhichMolecules (Basel, Switzerland) · 2018
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Paucimannose-RichMolecular & cellular proteomics : MCP · 2017
    Article
  17. Article
  18. Molecular Functions of Glycoconjugates in Autophagy.Journal of molecular biology · 2016
    Review
  19. Article
  20. Hierarchal Autophagic Divergence of Hematopoietic System.The Journal of biological chemistry · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Junichi SeinoFrom the Glycometabolome Team, Systems Glycobiology Research Group, RIKEN Max Planck Joint Research Center, RIKEN Global Research Cluster, Saitama 351-0198, Japan.
Li Wang
Yoichiro Harada
Chengcheng Huang
Kumiko Ishii
Noboru Mizushima
Tadashi Suzuki
RIKEN · JPSaitama University · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Macroautophagy is an essential, homeostatic process involving degradation of a cell's own components; it plays a role in catabolizing cellular components, such as protein or lipids, and damaged or excess organelles. Here, we show that in Atg5(-/-) cells, sialyloligosaccharides specifically accumulated in the cytosol. Accumulation of these glycans was observed under non-starved conditions, suggesting that non-induced, basal autophagy is essential for their catabolism. Interestingly, once accumulated in the cytosol, sialylglycans cannot be efficiently catabolized by resumption of the autophagic process, suggesting that functional autophagy is important for preventing sialyloligosaccharides from accumulating in the cytosol. Moreover, knockdown of sialin, a lysosomal transporter of sialic acids, resulted in a significant reduction of sialyloligosaccharides, implying that autophagy affects the substrate specificity of this transporter. This study thus provides a surprising link between basal autophagy and catabolism of N-linked glycans.

Indexed as

AutophagyGene Expression RegulationAnimalsAutophagy-Related Protein 5CytosolFibroblastsLysosomesMetabolismMiceMicrotubule-Associated ProteinsOligosaccharidesRNA, Small InterferingSubcellular FractionsSubstrate SpecificityAtg5 protein, mouseAutophagy-Related Protein 5Microtubule-Associated ProteinsOligosaccharidesRNA, Small InterferingsialooligosaccharidesAutophagyGlycan CatabolismGlycoproteinLysosomal GlycoproteinsLysosomesOligosaccharideSialic AcidSialinSialyloligosaccharides

Identifiers

PMID23880766
PMCPMC3772239
OpenAlexW1974351333

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.