Evidence map›Paper›PMID 23879974›Full record

ArticleBMC pharmacology & toxicology2013

Polycomblike protein PHF1b: a transcriptional sensor for GABA receptor activity.

Shamol Saha, Yinghui Hu, Stella C Martin, Sabita Bandyopadhyay, Shelley J Russek, David H Farb

Open access · goldAbstract read
In one paragraph

Article in BMC pharmacology & toxicology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Shamol SahaDepartment of Pharmacology & Experimental Therapeutics, Laboratory of Translational Epilepsy, Boston University School of Medicine, Boston, MA 02118, USA.
Yinghui Hu
Stella C Martin
Sabita Bandyopadhyay
Shelley J Russek
David H Farb
Boston University · US

Funding

Molecular Determinants of GABAA Receptor Gene RegulationR01NS050393 · NINDS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI RUSSEK, SHELLEY J · 2006 to 2010
$1.8M
ALCOHOL RESPONSE ELEMENTS IN HUMAN GABA/AR GENE CLUSTERSR01AA011697 · NIAAA · BOSTON UNIVERSITY MEDICAL CAMPUS · PI FARB, DAVID HOWARD · 1998 to 2002
$942k
NIAAA NIH HHS R01 AA11697-09NINDS NIH HHS R01 NS050393-010A
6 · The paper itself

Abstract

backgroundThe γ-aminobutyric acid (GABA) type A receptor (GABA(A)R) contains the recognition sites for a variety of agents used in the treatment of brain disorders, including anxiety and epilepsy. A better understanding of how receptor expression is regulated in individual neurons may provide novel opportunities for therapeutic intervention. Towards this goal we have studied transcription of a GABA(A)R subunit gene (GABRB1) whose activity is autologously regulated by GABA via a 10 base pair initiator-like element (β(1)-INR).

methodsBy screening a human cDNA brain library with a yeast one-hybrid assay, the Polycomblike (PCL) gene product PHD finger protein transcript b (PHF1b) was identified as a β(1)-INR associated protein. Promoter/reporter assays in primary rat cortical cells demonstrate that PHF1b is an activator at GABRB1, and chromatin immunoprecipitation assays reveal that presence of PHF1 at endogenous Gabrb1 is regulated by GABA(A)R activation.

resultsPCL is a member of the Polycomb group required for correct spatial expression of homeotic genes in Drosophila. We now show that PHF1b recognition of β(1)-INR is dependent on a plant homeodomain, an adjacent helix-loop-helix, and short glycine rich motif. In neurons, it co-immunoprecipitates with SUZ12, a key component of the Polycomb Repressive Complex 2 (PRC2) that regulates a number of important cellular processes, including gene silencing via histone H3 lysine 27 trimethylation (H3K27me3).

conclusionsThe observation that chronic exposure to GABA reduces PHF1 binding and H3K27 monomethylation, which is associated with transcriptional activation, strongly suggests that PHF1b may be a molecular transducer of GABA(A)R function and thus GABA-mediated neurotransmission in the central nervous system.

Indexed as

AnimalsCells, CulturedChlorocebus aethiopsCOS CellsDNA-Binding Proteinsgamma-Aminobutyric AcidHippocampusHumansMaleNeocortexNeuronsPolycomb-Group ProteinsProtein SubunitsRatsRats, Sprague-DawleyReceptors, GABA-ADNA-Binding ProteinsGABRB1 protein, humangamma-Aminobutyric AcidPHF1 protein, humanPolycomb-Group ProteinsProtein SubunitsReceptors, GABA-ATranscription Factors

Identifiers

PMID23879974
PMCPMC3734045
OpenAlexW1990026602

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.